Factsheet for PGSC0003DMT400073004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013150.2.1	Tomato	plastid	93.7	95.71
PGSC0003DMT400072873	Potato	plastid	83.19	81.15
VIT_01s0182g00050.t01	Wine grape	plastid	65.76	64.67
KRH50559	Soybean	plastid	63.66	62.22
KRG89557	Soybean	plastid	63.45	62.01
AT1G14030.1	Thale cress	plastid	57.14	56.43
CDY36426	Canola	cytosol	8.4	56.34
CDY16126	Canola	plastid	57.35	56.29
Bra026865.1-P	Field mustard	plastid	57.14	56.2
GSMUA_Achr7P21060_001	Banana	cytosol	57.14	56.08
CDY33784	Canola	plastid	56.72	55.79
Os09t0411650-01	Rice	plastid	53.78	51.72
GSMUA_Achr7P21080_001	Banana	cytosol, plasma membrane, plastid	56.72	51.53
Zm00001d020437_P001	Maize	plastid	52.73	51.33
KXG35611	Sorghum	plastid	51.89	50.41
TraesCS5D01G238000.2	Wheat	plastid	51.47	49.49
TraesCS5A01G229500.2	Wheat	plastid	50.84	48.79
TraesCS5B01G228300.1	Wheat	plastid	50.63	48.69
HORVU5Hr1G066350.2	Barley	plastid	51.05	47.18
KRH75058	Soybean	plastid	16.39	46.99
PGSC0003DMT400044855	Potato	plastid	21.43	20.24
PGSC0003DMT400017960	Potato	plastid	17.65	16.0

Protein Annotations

MapMan:1.2.1.3.1	EntrezGene:102587278	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030785
GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	UniProt:M1CRD2	PFAM:PF00856
PFAM:PF09273	EnsemblPlantsGene:PGSC0003DMG400028394	PGSC:PGSC0003DMG400028394	EnsemblPlants:PGSC0003DMT400073004	PIRSF:PIRSF009328	PFscan:PS50280
PFscan:PS51583	PANTHER:PTHR13271	PANTHER:PTHR13271:SF29	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0002965859	RefSeq:XP_006348752.1
SEG:seg	:	:	:	:	:

Description

Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400028394]

Coordinates

chr5:+:68265..72989

Molecular Weight (calculated)

53590.2 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.154

Length

476 amino acids

Sequence
(BLAST)

001: MASVFSSSFL CPLKTTKLRI KLQTLQSSQK PFLINSFQLR ELDPKIPQPV QTFWKWLCDE GVVSIKTPVK PGIVAEGLGL VAKRDISKGE TVLGVPKRFW
101: INTDAVAESE IGNVCTGLEP WISLALFLLR EKWKDDSKWK YYMAVLPEST DSTIYWSEGE LSEIQGTQLL CTTLSVKEYV QNEFQKVEEQ VILGNKQLFP
201: FPITLDDFFW AFGILRSRAF SRGGIQNLML VPFADLANHS VKVTTEDHIH EIGGPAGLFS WDLLFSFQSP LKLKAGDQFL IQYGLNKSNA DMAIGYGFIE
301: PNSARDAFTL TLEISKTDDF YGDKLDIAES NGLGETADFD IKLGQSLPPS LFPYLRLVAL GGTDNFLIES ISGNAVWNLL ELPVSRANEE LICKVVRDSC
401: RSALSGYHTT IEEDEKLMKE GNLSSRLQIA VGVRAGEKKV LQQLDDIFRE RELELDELEY YQERRLKDLD LVGEPK

Best Arabidopsis Sequence Match ( AT1G14030.1 )
(BLAST)

001: MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR NFWKWLRDQG VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI
101: NPETVTASKI GPLCGGLKPW VSVALFLIRE KYEEESSWRV YLDMLPQSTD STVFWSEEEL AELKGTQLLS TTLGVKEYVE NEFLKLEQEI LLPNKDLFSS
201: RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP AIKTEDYAYE IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN
301: PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML QYLRLVALGG PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS
401: ALSGFDTTIE EDEKLLDKGK LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE LELDILEYYQ ERRLKDLGLV GEQGDIIFWE TK

Arabidopsis Description

LSMT-L[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XI84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.