CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020437_P001	Maize	plastid	90.2	90.39
Os09t0411650-01	Rice	plastid	77.14	76.36
TraesCS5D01G238000.2	Wheat	plastid	73.27	72.53
TraesCS5B01G228300.1	Wheat	plastid	72.86	72.12
TraesCS5A01G229500.2	Wheat	plastid	72.45	71.57
HORVU5Hr1G066350.2	Barley	plastid	72.24	68.74
GSMUA_Achr7P21060_001	Banana	cytosol	60.82	61.44
VIT_01s0182g00050.t01	Wine grape	plastid	59.8	60.54
AT1G14030.1	Thale cress	plastid	55.92	56.85
Bra026865.1-P	Field mustard	plastid	55.71	56.41
GSMUA_Achr7P21080_001	Banana	cytosol, plasma membrane, plastid	60.0	56.11
CDY16126	Canola	plastid	55.51	56.08
CDY33784	Canola	plastid	55.1	55.79
PGSC0003DMT400072873	Potato	plastid	55.31	55.53
Solyc05g013160.2.1	Tomato	plastid	55.1	55.33
KRH50559	Soybean	plastid	54.69	55.03
CDY36426	Canola	cytosol	7.96	54.93
KRG89557	Soybean	plastid	53.88	54.21
PGSC0003DMT400073004	Potato	plastid	50.41	51.89
Solyc05g013150.2.1	Tomato	plastid	49.18	51.72
KRH75058	Soybean	plastid	12.04	35.54
EES07338	Sorghum	plastid	21.84	21.44
EES01150	Sorghum	plastid	21.43	20.51

Protein Annotations

MapMan:1.2.1.3.1	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	UniProt:A0A1B6QCI5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018023	GO:GO:0019538	GO:GO:0030785
GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	EnsemblPlants:KXG35611	ProteinID:KXG35611
ProteinID:KXG35611.1	PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328	PFscan:PS50280	PFscan:PS51583
PANTHER:PTHR13271	PANTHER:PTHR13271:SF29	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom
EnsemblPlantsGene:SORBI_3002G199000	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0003C6ABB5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:58871181..58873394

Molecular Weight (calculated)

54451.7 Da

IEP (calculated)

4.543

GRAVY (calculated)

-0.228

Length

490 amino acids

Sequence
(BLAST)

001: MATLHHHLLP LQRLPNSPRQ PPPRLRLPTK PSRPHSRLLP RAAASTAATT VTALEDFRRW LASHSVGDGG KTFPAAVPEG LGLVAARDLP RGEVVAEVPK
101: KLWMDADAVA ASDIGRACGG GGGGLRPWVA VALLLLSEVA RGADSPWAPY LAILPRQTDS TIFWSEEELL EIQGTQLLST TVGVKEYVQS EFDSVQAEII
201: SRNKDLFPGS ITFDDFLWAF GILRSRVFPE LRGDKLALVP FADLVNHSPD ITSEGSSWEI KGKGLFGREP MFSLRTPVDV KSGQQIYIQY DLDKSNAELA
301: LDYGFVESNP SRDSYTVTLE ISESDPFYGD KLDIAELNEL GETAYFDIIL DEPLPPQMLP YLRLLCIGGT DAFILEALFR NSVWGHLELP LSPDNEESIC
401: QVMRDACKSA LAAYHTTIEE DEELSERENL QPRLTIAIGV RAGEKKVLQH IDNIFKQREQ ELDGLEYYQE RRLKDLGLVS DNGEIIFWES

Best Arabidopsis Sequence Match ( AT1G14030.1 )
(BLAST)

001: MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR NFWKWLRDQG VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI
101: NPETVTASKI GPLCGGLKPW VSVALFLIRE KYEEESSWRV YLDMLPQSTD STVFWSEEEL AELKGTQLLS TTLGVKEYVE NEFLKLEQEI LLPNKDLFSS
201: RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP AIKTEDYAYE IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN
301: PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML QYLRLVALGG PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS
401: ALSGFDTTIE EDEKLLDKGK LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE LELDILEYYQ ERRLKDLGLV GEQGDIIFWE TK

Arabidopsis Description

LSMT-L[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XI84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.