Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d037747_P001 | |
| Zm00001d039455_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07670.1 | Zm00001d037747_P001 | AT3G13720.1 | 21798944 |
| AT3G07670.1 | Zm00001d039455_P002 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051668_P001 | Maize | plastid | 63.16 | 14.31 |
| Zm00001d051669_P002 | Maize | plastid | 63.16 | 14.09 |
| GSMUA_Achr3P10760_001 | Banana | plastid | 46.49 | 10.56 |
| KRH17729 | Soybean | plastid | 42.98 | 9.82 |
| VIT_12s0057g01250.t01 | Wine grape | plastid | 42.11 | 9.66 |
| PGSC0003DMT400044855 | Potato | plastid | 41.23 | 9.33 |
| Solyc07g045310.2.1 | Tomato | nucleus | 40.35 | 9.18 |
| AT3G07670.1 | Thale cress | plastid | 40.35 | 9.13 |
| Bra040022.1-P | Field mustard | plastid | 40.35 | 9.07 |
| CDY22127 | Canola | plastid | 40.35 | 9.07 |
| Zm00001d044101_P002 | Maize | cytosol | 16.67 | 4.96 |
| Zm00001d020437_P001 | Maize | plastid | 16.67 | 3.89 |
| Zm00001d011448_P002 | Maize | plastid | 15.79 | 3.33 |
Protein Annotations
| EnsemblPlants:Zm00001d034120_P001 | EnsemblPlants:Zm00001d034120_T001 | EnsemblPlantsGene:Zm00001d034120 | Gene3D:3.90.1420.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR036464 |
| InterPro:Rubisco_LSMT_subst-bd | InterPro:Rubisco_LSMT_subst-bd_sf | PANTHER:PTHR13271 | PANTHER:PTHR13271:SF81 | PFAM:PF09273 | ProteinID:ONM09615.1 |
| SUPFAM:SSF81822 | UniParc:UPI00084366B2 | UniProt:A0A1D6L5N4 | MapMan:35.2 | : | : |
Description
Rubisco methyltransferase family protein
Coordinates
chr1:-:284493307..284494105
Molecular Weight (calculated)
12785.4 Da
IEP (calculated)
4.814
GRAVY (calculated)
-0.238
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYAFLVVSP PDMSQCFEEM AAAASNKTSS KPGLNYPGLE EQALQFILDC CESNIEKYTK YLESEPIMFQ GGAGSLEVSM NAKQANRTLL LKQLARDLCI
101: SERRILYRTQ YVSQ
101: SERRILYRTQ YVSQ
001: MKRYDVPDWP LLATYLISEA SLQKSSRWFN YISALPRQPY SLLYWTRTEL DMYLEASQIR ERAIERITNV VGTYEDLRSR IFSKHPQLFP KEVFNDETFK
101: WSFGILFSRL VRLPSMDGRF ALVPWADMLN HNCEVETFLD YDKSSKGVVF TTDRPYQPGE QVFISYGNKS NGELLLSYGF VPREGTNPSD SVELALSLRK
201: NDKCYEEKLD ALKKHGLSTP QCFPVRITGW PMELMAYAYL VVSPPDMRNN FEEMAKAASN KTSTKNDLKY PEIEEDALQF ILDSCETSIS KYSRFLKESG
301: SMDLDITSPK QLNRKAFLKQ LAVDLSTSER RILYRAQYIL RRRLRDIRSG ELKALRLFSG LRNFFK
101: WSFGILFSRL VRLPSMDGRF ALVPWADMLN HNCEVETFLD YDKSSKGVVF TTDRPYQPGE QVFISYGNKS NGELLLSYGF VPREGTNPSD SVELALSLRK
201: NDKCYEEKLD ALKKHGLSTP QCFPVRITGW PMELMAYAYL VVSPPDMRNN FEEMAKAASN KTSTKNDLKY PEIEEDALQF ILDSCETSIS KYSRFLKESG
301: SMDLDITSPK QLNRKAFLKQ LAVDLSTSER RILYRAQYIL RRRLRDIRSG ELKALRLFSG LRNFFK
Arabidopsis Description
Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.