Factsheet for TraesCS5A01G106100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	TraesCS2A01G169300.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS2B01G195600.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS2D01G176800.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5A01G212800.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5B01G211000.1	AT1G19180.1	21798944
AT5G14260.1	TraesCS5D01G219300.2	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123700.2	Wheat	plastid	99.0	99.0
HORVU5Hr1G033180.3	Barley	mitochondrion	96.61	91.32
TraesCS5B01G110900.1	Wheat	plastid	96.61	90.3
Zm00001d044101_P002	Maize	cytosol	67.27	87.99
Os12t0236900-01	Rice	plastid	85.43	84.09
EES01150	Sorghum	plastid	82.63	80.86
Zm00001d011448_P002	Maize	plastid	81.04	75.19
CDX91073	Canola	mitochondrion, nucleus, plastid	60.28	70.4
GSMUA_Achr3P16970_001	Banana	plastid	68.66	67.58
VIT_14s0171g00310.t01	Wine grape	plastid	65.67	64.64
CDX85607	Canola	plastid	47.51	64.15
KRG94324	Soybean	plastid	64.07	63.94
KRH57642	Soybean	plastid	64.07	63.82
Bra008769.1-P	Field mustard	plastid	65.47	63.57
Bra023454.1-P	Field mustard	plastid	63.47	62.97
AT5G14260.1	Thale cress	plastid	64.27	62.65
Solyc02g068050.2.1	Tomato	plastid	52.49	61.16
PGSC0003DMT400017960	Potato	plastid	63.87	60.95
CDX85606	Canola	cytosol	12.38	60.78
CDX69594	Canola	cytosol	65.07	35.55
CDY57896	Canola	cytosol	64.27	35.11
TraesCS6A01G286800.2	Wheat	plastid	22.95	22.82
TraesCS5A01G229500.2	Wheat	plastid	21.96	22.18
TraesCS3A01G539300.2	Wheat	mitochondrion	17.76	19.14

Protein Annotations

EnsemblPlants:TraesCS5A01G106100.1	EnsemblPlantsGene:TraesCS5A01G106100	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	InterPro:IPR036464
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	PFAM:PF09273	SEG:seg
SUPFAM:SSF81822	SUPFAM:SSF82199	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5A:+:173099957..173114351

Molecular Weight (calculated)

55544.0 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.164

Length

501 amino acids

Sequence
(BLAST)

001: MASSALSGTH HRLLLPCFLR RLPRPRSRSC SRLRLAACHA DTLLSSSGAQ GPPSPAACSS ASSAGGFSDW LLTNGLPPGK VAILERPVPC SRGGKDRPLH
101: FVAAGQDLEA GDVAFEVPMS LVVTLERVLG DESVAELLTT NKLSELACLA LYLMYEKKQG RDSLWYPYIK ELDRQRGRGQ LAVESPLLWI ESELDYLNGS
201: PMRDEVVVRD EGIRREYNEL DTLWFMAGSL FKQYPFDVPT EAFPFEIFKQ AFVAVQSCVV HLQKVSLARR FALVPLGPPL LTYKSNCKAM LTAVDGSVRL
301: LVDRPYKAGE PIIVWCGPQP NSRLLLNYGF VDEDNPYDRI AIEASLNTED PQYQEKRMVA QRNGKLAIQK FQVCVGKEKE TISEMLPYLR LGYISDPDEM
401: QCILSSEGDT CPVSPCSERA VLDQLVVYLK SRLAGYPTTL DEDEAMLAEG SLEPKKEVAT RLVRLEKKML HGCLQAANEF ISGLPDHTVS PCPALYAPEL
501: K

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.