Factsheet for GSMUA_Achr3P16970_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT5G14260.1	GSMUA_AchrUn_...	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044101_P002	Maize	cytosol	58.35	77.55
CDX91073	Canola	mitochondrion, nucleus, plastid	62.67	74.36
VIT_14s0171g00310.t01	Wine grape	plastid	72.5	72.5
Bra023454.1-P	Field mustard	plastid	69.35	69.9
KRG94324	Soybean	plastid	67.98	68.92
TraesCS5D01G123700.2	Wheat	plastid	67.78	68.86
TraesCS5A01G106100.1	Wheat	golgi	67.58	68.66
KRH57642	Soybean	plastid	67.78	68.59
Os12t0236900-01	Rice	plastid	68.37	68.37
AT5G14260.1	Thale cress	plastid	68.76	68.09
Bra008769.1-P	Field mustard	plastid	68.76	67.83
CDX85607	Canola	plastid	49.31	67.66
Solyc02g068050.2.1	Tomato	plastid	56.39	66.74
EES01150	Sorghum	plastid	66.6	66.21
PGSC0003DMT400017960	Potato	plastid	68.17	66.1
HORVU5Hr1G033180.3	Barley	mitochondrion	67.39	64.72
TraesCS5B01G110900.1	Wheat	plastid	67.78	64.37
Zm00001d011448_P002	Maize	plastid	65.23	61.48
CDX85606	Canola	cytosol	11.79	58.82
CDX69594	Canola	cytosol	69.35	38.5
CDY57896	Canola	cytosol	69.16	38.39
GSMUA_Achr3P10760_001	Banana	plastid	22.99	23.31
GSMUA_Achr7P21060_001	Banana	cytosol	19.45	20.41
GSMUA_Achr7P21080_001	Banana	cytosol, plasma membrane, plastid	18.86	18.32
GSMUA_Achr11P...	Banana	mitochondrion	18.07	17.97

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	EnsemblPlantsGene:GSMUA_Achr3G16970_001	EnsemblPlants:GSMUA_Achr3P16970_001
EnsemblPlants:GSMUA_Achr3T16970_001	InterPro:IPR036464	UniProt:M0SFB3	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI000296DC27	SEG:seg

Description

SET domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G16970_001]

Coordinates

chr3:+:18227640..18235363

Molecular Weight (calculated)

57019.7 Da

IEP (calculated)

7.084

GRAVY (calculated)

-0.198

Length

509 amino acids

Sequence
(BLAST)

001: MDVAHLLGPC VSSPFLSPSP RPFSGLPGLR IQRRRAPFRT TRRLNQCLAC GADTLVAGSE GSSQALRCEK AAEAGDLKSW LHRHGLPPCK VVLKERHSHD
101: GKHRPIHYVA ASENLQAGDV AYLVPNSLVV TLDRVLGNET IAELLTTNKL SELACLALYL MYEKKQGKKS FWYPFIRELD RQRGRGQVAV ESPLLWSESE
201: LAYLDGSHTR AEVLEREEGI KREYNELDTV WFMAGSLFKQ YPFDIPTEAF PYEIFKQAFV AVQSCVVHLQ NVSLARRFAL VPLGPPLLAY KSNCKAMLTA
301: VDDAVQLVVD RPYKAGEPIV VWCGPQPNSR LLLNYGFVDE DNPYDRIVIE ASLNTEDPQY QEKRMVAQRN GKLAVQVFHV YVGREKEAIS EMLPYLRLGY
401: ISDTAEMNSV ISSQGPTCPL SPCMEQAVLD QLAAYFEARL AAYPTTLSED EAMLADRNLN PKKQVAVQLV KLEKKILHAC LRAIFDFTDQ LPDNTISPCP
501: APFAPHLKF

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.