Factsheet for Os12t0236900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0402800-01
Os07t0615200-01
Os09t0439200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Os03t0402800-01	AT1G19180.1	21798944
AT5G14260.1	Os07t0615200-01	AT1G19180.1	21798944
AT5G14260.1	Os09t0439200-01	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044101_P002	Maize	cytosol	68.96	91.64
TraesCS5D01G123700.2	Wheat	plastid	84.48	85.83
TraesCS5A01G106100.1	Wheat	golgi	84.09	85.43
EES01150	Sorghum	plastid	83.1	82.62
TraesCS5B01G110900.1	Wheat	plastid	84.48	80.22
HORVU5Hr1G033180.3	Barley	mitochondrion	82.12	78.87
Zm00001d011448_P002	Maize	plastid	80.55	75.93
CDX91073	Canola	mitochondrion, nucleus, plastid	58.35	69.23
GSMUA_Achr3P16970_001	Banana	plastid	68.37	68.37
VIT_14s0171g00310.t01	Wine grape	plastid	64.83	64.83
KRG94324	Soybean	plastid	63.46	64.34
CDX85607	Canola	plastid	46.76	64.15
KRH57642	Soybean	plastid	62.87	63.62
Bra023454.1-P	Field mustard	plastid	62.48	62.97
AT5G14260.1	Thale cress	plastid	63.06	62.45
Bra008769.1-P	Field mustard	plastid	63.06	62.21
Solyc02g068050.2.1	Tomato	plastid	51.08	60.47
PGSC0003DMT400017960	Potato	plastid	62.28	60.38
CDX85606	Canola	cytosol	11.2	55.88
CDX69594	Canola	cytosol	62.87	34.9
CDY57896	Canola	cytosol	61.89	34.35
Os02t0725200-01	Rice	plasma membrane	23.38	23.71
Os09t0411650-01	Rice	plastid	20.83	21.41
Os01t0976450-00	Rice	mitochondrion	14.73	19.58
Os01t0976500-01	Rice	plasma membrane	14.54	7.78

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.1	EntrezGene:4351854	ProteinID:ABA96840.1	ProteinID:BAF29485.1
ProteinID:BAT16477.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018026	GO:GO:0019538
InterPro:IPR036464	EnsemblPlantsGene:Os12g0236900	EnsemblPlants:Os12t0236900-01	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
UniProt:Q2QVA7	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI000068170C
RefSeq:XP_015618113.1	RefSeq:XP_015618114.1	SEG:seg	:	:	:

Description

SET domain containing protein. (Os12t0236900-01)

Coordinates

chr12:+:7546578..7554128

Molecular Weight (calculated)

56528.9 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.192

Length

509 amino acids

Sequence
(BLAST)

001: MASSASVSPA AASHHRLLLP CSPRRLPRPR PRPSPRLLRS ARPRLVACHA DTLLPSSSPA AAAAACASTA SANGFSDWLR EHGLPPGKVA ILDRPVPCFR
101: EGKDLPLHYV AAGQDLEAGD VAFEVPMSLV VTLERVLGDE SVAELLTTNK LSELACLALY LMYEKKQGQD SFWYPYIKEL DRQRGRGQLA VESPLLWTES
201: ELNYLKGSPI KDEVVARDEG IRREYNELDT LWFMAGSLFQ QYPFDIPTEA FPFEIFKQAF VAVQSCVVHL QKVSLARRFA LVPLGPPLLT YKSNCKAMLT
301: AVGDSVRLVV DRPYKAGEPI IVWCGPQPNS RLLLNYGFID EDNPYDRIVI EASLNIEDPQ FQEKRMVAQR NGKLAIQNFH VCVGKEKETI AEMLPYLRLG
401: YISDPDEMQS ILSSEGDTCP VSPCTERAVL DQLVGYLESR LADYPTTLDE DDAMLADGNL EPKKEVATRL VRLEKKLLHG CLQAANEFIN DLPDHTVSPC
501: PAPFAPELK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.