CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26697
CDY41023

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	CDY26697	AT1G19180.1	21798944
AT5G14260.1	CDY41023	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85606	Canola	cytosol	20.05	84.31
Bra023454.1-P	Field mustard	plastid	91.61	77.82
Zm00001d044101_P002	Maize	cytosol	65.97	73.89
CDX85607	Canola	plastid	62.7	72.51
AT5G14260.1	Thale cress	plastid	86.01	71.79
VIT_14s0171g00310.t01	Wine grape	plastid	78.79	66.4
KRH57642	Soybean	plastid	75.76	64.61
KRG94324	Soybean	plastid	75.29	64.34
GSMUA_Achr3P16970_001	Banana	plastid	74.36	62.67
Solyc02g068050.2.1	Tomato	plastid	61.54	61.4
PGSC0003DMT400017960	Potato	plastid	75.06	61.33
TraesCS5D01G123700.2	Wheat	plastid	70.63	60.48
TraesCS5A01G106100.1	Wheat	golgi	70.4	60.28
EES01150	Sorghum	plastid	69.7	58.4
Os12t0236900-01	Rice	plastid	69.23	58.35
HORVU5Hr1G033180.3	Barley	mitochondrion	69.93	56.6
TraesCS5B01G110900.1	Wheat	plastid	70.16	56.16
Zm00001d011448_P002	Maize	plastid	69.0	54.81
CDY57896	Canola	cytosol	89.51	41.88
CDX69594	Canola	cytosol	89.51	41.88
CDY22127	Canola	plastid	25.17	21.3
CDX93745	Canola	cytosol	7.93	21.25
CDY33784	Canola	plastid	21.91	19.42
CDY16126	Canola	plastid	21.45	18.97
CDX73405	Canola	mitochondrion	13.52	18.77
CDY40200	Canola	mitochondrion	18.65	17.13
CDY36426	Canola	cytosol	2.8	16.9
CDY40197	Canola	cytosol	6.06	15.29
CDX74033	Canola	endoplasmic reticulum	5.36	11.06
CDY07978	Canola	endoplasmic reticulum	5.36	11.0

Protein Annotations

EnsemblPlants:CDX91073	EnsemblPlantsGene:GSBRNA2T00151846001	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	PFAM:PF09273	ProteinID:CDX91073	ProteinID:CDX91073.1
SEG:seg	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0004EEB430	MapMan:35.2	:

Description

BnaC02g05240D

Coordinates

chrLK031865:-:642206..644627

Molecular Weight (calculated)

48276.7 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.156

Length

429 amino acids

Sequence
(BLAST)

001: MGSLKKKKKK LLTTNKLSEL ACLALYLMYE KKQGKKSKGD VAFSVPNSLV VTLERVLGNE TIAELLTTNK LSELACLALY LMYEKKQGKK SVWYPYIREL
101: DRQRGRGQLD VESPLLWSEA ELEYLTGSPT KAEVLERAEG IKREYSELDT VWFMAGSLFQ QYPFDIPTEA FSFEIFKQAF VAIQSCVVHL QNVSLARRFA
201: LVPLGPPLLA YCSNCKAMLT AVDSAVELVV DRAYKAGDPI VAWCGPQPNA KLLLNYGFVD EDNPYDRIIV EAALSTDDPQ YQDKRLVAQR NGKLSQQVFQ
301: VRVGKEREAV QDMLPYLRLG YMSDPAEMQS VISSQGPVCS MSPCMERAVL DQLADYFMRR LSRYPTTLKE DDALLADPSL NPRKRVATRL VRLEKKMLAA
401: CLVATVDFLN ELPDTTISPC PALYALSLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.