CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73405	Canola	mitochondrion	88.75	45.95
Solyc06g036700.1.1	Tomato	mitochondrion	43.75	34.48
CDY40200	Canola	mitochondrion	86.88	29.76
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	50.0	24.46
AT3G55080.1	Thale cress	mitochondrion	67.5	23.33
VIT_13s0067g03620.t01	Wine grape	cytosol	53.75	19.11
KRH36235	Soybean	mitochondrion	46.88	16.41
Os01t0976450-00	Rice	mitochondrion	36.25	15.14
TraesCS3D01G544800.2	Wheat	mitochondrion	38.75	13.63
TraesCS3A01G539300.2	Wheat	mitochondrion	37.5	12.9
GSMUA_Achr11P...	Banana	mitochondrion	38.12	11.91
CDX85607	Canola	plastid	21.88	9.43
CDX91073	Canola	mitochondrion, nucleus, plastid	21.25	7.93
CDY33784	Canola	plastid	20.0	6.61
CDY16126	Canola	plastid	20.0	6.6
CDY22127	Canola	plastid	20.0	6.31
CDX74033	Canola	endoplasmic reticulum	6.25	4.81
CDY07978	Canola	endoplasmic reticulum	6.25	4.78
CDX69594	Canola	cytosol	23.75	4.14
CDY57896	Canola	cytosol	23.75	4.14
TraesCS3B01G605100.1	Wheat	mitochondrion	27.5	3.53
CDX85606	Canola	cytosol	0.62	0.98
CDY40197	Canola	cytosol	0.0	0.0
CDY36426	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX93745	EnsemblPlantsGene:GSBRNA2T00156467001	Gene3D:3.90.1410.10	PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	ProteinID:CDX93745
ProteinID:CDX93745.1	SUPFAM:SSF82199	UniParc:UPI0004EF4103	MapMan:35.2	:	:

Description

BnaA09g23450D

Coordinates

chrLK031877:-:345910..346853

Molecular Weight (calculated)

17793.6 Da

IEP (calculated)

7.439

GRAVY (calculated)

0.065

Length

160 amino acids

Sequence
(BLAST)

001: MSSYVSAALD KDCIDFLPWL EQIAGAKLTN TLSIGKSVYG RALFASKVIH AGDCILKVPF NAQITPDELP ADIRVSLTDK VGNIGKLAAL LMIEINAGQN
101: SRWFPYISRL PQLSDMHSAI FWDENEFSMI RCSAVHKESV KQKARIEKEF SLVSQVSMFP

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.