CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93745	Canola	cytosol	45.95	88.75
CDY40200	Canola	mitochondrion	85.76	56.75
AT3G55080.1	Thale cress	mitochondrion	67.64	45.14
Bra028018.1-P	Field mustard	cytosol	18.12	39.16
Solyc06g036700.1.1	Tomato	mitochondrion	24.6	37.44
VIT_13s0067g03620.t01	Wine grape	cytosol	47.57	32.67
KRH36235	Soybean	mitochondrion	45.63	30.85
TraesCS3D01G544800.2	Wheat	mitochondrion	39.81	27.03
Os01t0976450-00	Rice	mitochondrion	33.01	26.63
TraesCS3A01G539300.2	Wheat	mitochondrion	39.16	26.02
GSMUA_Achr11P...	Banana	mitochondrion	38.84	23.44
CDX85607	Canola	plastid	19.42	16.17
CDY33784	Canola	plastid	21.68	13.84
CDY22127	Canola	plastid	22.33	13.61
CDX91073	Canola	mitochondrion, nucleus, plastid	18.77	13.52
CDY16126	Canola	plastid	21.04	13.4
CDY40197	Canola	cytosol	4.85	8.82
CDY07978	Canola	endoplasmic reticulum	5.83	8.61
CDX74033	Canola	endoplasmic reticulum	5.5	8.17
TraesCS3B01G605100.1	Wheat	mitochondrion	30.42	7.54
CDX69594	Canola	cytosol	20.71	6.98
CDY57896	Canola	cytosol	20.71	6.98
CDY36426	Canola	cytosol	0.32	1.41
CDX85606	Canola	cytosol	0.32	0.98

Protein Annotations

EnsemblPlants:CDX73405	EnsemblPlantsGene:GSBRNA2T00108889001	Gene3D:3.90.1410.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001214	InterPro:SET_dom	PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	PFAM:PF00856	ProteinID:CDX73405
ProteinID:CDX73405.1	SUPFAM:SSF82199	UniParc:UPI0004EDDB04	MapMan:35.2	:	:

Description

BnaC08g25980D

Coordinates

chrLK031799:+:188672..191238

Molecular Weight (calculated)

34718.3 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.121

Length

309 amino acids

Sequence
(BLAST)

001: MLLSCPTVKL IVFQQRRTFT SSLAKRFSFN AQSLTESQAQ AALDKDCIDF LPWLEQIAGA KLTNTLSIGK SPYGSRALFA SKVIHAGDCI LKVPFNAQIT
101: PDELPTDIRV SLTDKVGNIG KLAALLMIEI NAGQNSRWFP YISRLPQLSD MHSTIFWDEN EFGMIRCSAV HKETVKQKAR IEKEFSLVSQ AFKEHLPSAI
201: ERPALENFMY AYTLVGSRAW ETSRGISLIP FADFMNHDGL SASIVLTDED NQLSEVTADR DYSPGDEVLI RYGEFSNATL MLDFGFTFPY NTHDEVCFLY
301: YDCNNIDGT

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.