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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH76938 Soybean endoplasmic reticulum, plasma membrane 68.87 90.68
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 45.28 44.86
AT2G23640.1 Thale cress cytosol, peroxisome, plasma membrane 35.85 36.89
Bra039207.1-P Field mustard plasma membrane 34.43 35.1
CDY46067 Canola plasma membrane 34.43 35.1
CDX76854 Canola plasma membrane 33.49 34.3
PGSC0003DMT400026113 Potato plasma membrane, plastid 39.15 34.02
Solyc02g090370.2.1 Tomato plasma membrane 29.25 33.16
KRH18469 Soybean plasma membrane 29.25 31.31
KRG93546 Soybean plasma membrane 28.77 30.65
KRG91024 Soybean plasma membrane 28.3 29.41
KRH73588 Soybean plasma membrane 33.02 28.57
KRH35738 Soybean endoplasmic reticulum 27.36 28.43
KRH14529 Soybean cytosol, peroxisome, plasma membrane 32.55 28.16
KRH41254 Soybean cytosol, nucleus, plasma membrane 33.02 27.56
KRH59988 Soybean mitochondrion 32.08 26.77
KRH45979 Soybean cytosol, nucleus, plasma membrane 30.66 26.75
KRH06560 Soybean endoplasmic reticulum 32.08 26.56
KRH40357 Soybean endoplasmic reticulum 32.08 26.46
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 25.0 25.36
KRH75801 Soybean plasma membrane 25.0 25.36
KRG99174 Soybean endoplasmic reticulum, plasma membrane 10.38 25.29
KRH00872 Soybean endoplasmic reticulum 30.19 24.71
KRG99024 Soybean plasma membrane 29.25 23.48
KRH35899 Soybean plasma membrane 21.7 21.7
KRH48008 Soybean cytosol, peroxisome, plasma membrane 32.08 21.66
KRH39144 Soybean plasma membrane 22.17 21.17
KRH48561 Soybean plasma membrane 21.7 20.72
KRH35223 Soybean cytosol, nucleus, plasma membrane 22.64 19.2
KRH30696 Soybean plasma membrane 20.75 17.89
KRG91601 Soybean mitochondrion 23.11 14.41
Protein Annotations
MapMan:13.7.2.1EntrezGene:547494EMBL:ACUP02006756EMBL:AF004806EnsemblPlantsGene:GLYMA_11G059100GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020
GO:GO:0016021InterPro:IPR003388EnsemblPlants:KRH28521ProteinID:KRH28521ProteinID:KRH28521.1PFAM:PF02453
PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF86UniProt:Q9ZTZ3InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI00000AAD11:::::
Description
hypothetical protein
Coordinates
chr11:-:4467115..4468805
Molecular Weight (calculated)
24175.9 Da
IEP (calculated)
9.668
GRAVY (calculated)
0.160
Length
212 amino acids
Sequence
(BLAST)
001: MSSETKAETQ TLTTPSYSSD VDNGIVKDVV LWRRKKINIS VLVAATAAWV LMEVFEFNFL TLISWVAILG LASIFLYANM LRLLGKEPPN LLGLEVSEKT
101: TTRIAHTVRA WIEEGIRWLF LVGAEKEWPV FVGAVAGLLS LSYLGSCMDL LTLVYMGTLV GMAVPLTYVK NEDKIKRFVE WLREKHKRYY QIIDEKTIQK
201: IKSRIVKEKK TE
Best Arabidopsis Sequence Match ( AT2G23640.1 )
(BLAST)
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
Arabidopsis Description
RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.