Factsheet for VIT_12s0057g01470.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27910_001	Banana	plasma membrane	95.73	95.73
GSMUA_Achr3P04210_001	Banana	cytosol	94.79	94.79
VIT_00s1506g00010.t01	Wine grape	cytosol	66.35	93.96
VIT_14s0066g00180.t01	Wine grape	cytosol	86.73	87.56
VIT_00s0878g00030.t01	Wine grape	cytosol	42.18	87.25
VIT_00s0455g00010.t01	Wine grape	cytosol	31.28	49.62
VIT_00s1372g00020.t01	Wine grape	cytosol	45.02	47.98
VIT_16s0013g00520.t01	Wine grape	extracellular	45.97	47.78
VIT_12s0035g01150.t01	Wine grape	vacuole	44.55	46.53
VIT_13s0019g00520.t01	Wine grape	extracellular	43.6	42.59
VIT_06s0004g04200.t01	Wine grape	cytosol	42.65	41.67
VIT_08s0007g04750.t01	Wine grape	cytosol	42.65	41.67
VIT_08s0040g02490.t01	Wine grape	cytosol	41.71	40.74
VIT_15s0021g01410.t01	Wine grape	cytosol	39.34	40.49

Protein Annotations

EntrezGene:100263184	wikigene:100263184	MapMan:22.8.1.2	Gene3D:3.40.50.300	ProteinID:CBI28488	ProteinID:CBI28488.3
UniProt:D7TDB5	EMBL:FN595759	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0030100	EntrezGene:LOC100263184	wikigene:LOC100263184	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC53880	TIGR:TC57346
TIGRFAMs:TIGR00231	UniParc:UPI00015CA521	ArrayExpress:VIT_12s0057g01470	EnsemblPlantsGene:VIT_12s0057g01470	EnsemblPlants:VIT_12s0057g01470.t01	RefSeq:XP_002263290
RefSeq:XP_002263290.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:10189151..10194769

Molecular Weight (calculated)

23169.6 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.185

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGELFAKE HGLIFMEASA KTAQNVEEAF ISTASTIYKK IQEGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSSSQAGGCC S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.