Factsheet for GSMUA_Achr9P27910_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g01470.t01	Wine grape	extracellular	95.73	95.73
GSMUA_Achr3P04210_001	Banana	cytosol	93.84	93.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	52.13	79.14
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	91.0	76.8
GSMUA_Achr4P09730_001	Banana	cytosol	74.41	74.41
GSMUA_Achr8P25750_001	Banana	cytosol	71.56	68.33
GSMUA_Achr7P24260_001	Banana	cytosol	46.92	49.01
GSMUA_Achr3P32240_001	Banana	cytosol	45.97	48.02
GSMUA_Achr2P18340_001	Banana	plasma membrane	45.5	47.52
GSMUA_Achr11P...	Banana	cytosol	45.5	47.29
GSMUA_Achr8P15030_001	Banana	cytosol	45.5	47.29
GSMUA_Achr10P...	Banana	cytosol	43.13	45.05
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	45.5	42.29
GSMUA_Achr10P...	Banana	cytosol	43.13	42.13
GSMUA_Achr11P...	Banana	cytosol	42.65	41.67
GSMUA_Achr10P...	Banana	cytosol	42.18	41.2
GSMUA_Achr9P03220_001	Banana	cytosol	42.18	41.2
GSMUA_Achr6P34270_001	Banana	cytosol	42.18	41.2
GSMUA_Achr8P02620_001	Banana	cytosol	41.71	40.74
GSMUA_AchrUn_...	Banana	cytosol	41.71	40.74
GSMUA_Achr6P17450_001	Banana	cytosol	44.08	36.9
GSMUA_Achr7P06570_001	Banana	cytosol	45.97	35.27
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	45.97	32.23

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr9G27910_001	EnsemblPlants:GSMUA_Achr9P27910_001	EnsemblPlants:GSMUA_Achr9T27910_001
UniProt:M0U448	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029496AD	:	:

Description

Ras-related protein Rab-2-B [Source:GMGC_GENE;Acc:GSMUA_Achr9G27910_001]

Coordinates

chr9:-:32060713..32064087

Molecular Weight (calculated)

23144.4 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.206

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEEARQHANS NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF ISTAATIYKK IQDGVFDVSN ESYGIKVGYG GTAAPSGGRD
201: GSSAQAGGCC S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.