CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016295.1-P	Field mustard	cytosol	100.0	100.0
CDY46432	Canola	cytosol	99.17	99.17
CDX95913	Canola	cytosol, mitochondrion, plastid	95.83	95.83
CDY01759	Canola	cytosol, mitochondrion, plastid	95.83	95.83
CDY04284	Canola	cytosol, mitochondrion, plastid	95.0	95.0
CDY07341	Canola	extracellular	95.0	95.0
CDY44081	Canola	cytosol, mitochondrion, plastid	95.0	95.0
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	95.0	95.0
CDY68374	Canola	cytosol, mitochondrion, plastid	94.17	94.17
CDY00108	Canola	extracellular	92.5	92.5
CDY20010	Canola	cytosol, mitochondrion, plastid	92.5	92.5
Solyc06g069860.2.1	Tomato	nucleus	87.5	87.5
KRH40107	Soybean	endoplasmic reticulum	87.5	87.5
KRH01164	Soybean	cytosol	87.5	87.5
GSMUA_Achr6P14630_001	Banana	plasma membrane	86.67	86.67
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	85.83	85.83
GSMUA_Achr8P17000_001	Banana	cytosol	85.83	85.83
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	85.83	85.83
TraesCS7A01G300500.1	Wheat	golgi, unclear	85.0	85.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
TraesCS5D01G239800.1	Wheat	cytosol	84.17	84.87
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	84.17	84.87
TraesCS5A01G227800.1	Wheat	cytosol	84.17	84.87
TraesCS2D01G323900.1	Wheat	unclear	84.17	84.87
TraesCS7B01G201400.1	Wheat	cytosol	84.17	84.87
TraesCS7D01G296300.1	Wheat	cytosol	84.17	84.87
TraesCS2B01G342800.1	Wheat	cytosol	84.17	84.87
TraesCS2A01G339200.1	Wheat	cytosol	84.17	84.87
Zm00001d050411_P001	Maize	cytosol	84.17	84.87
HORVU7Hr1G071240.1	Barley	cytosol	84.17	84.87
EES15047	Sorghum	cytosol	84.17	84.87
EER98897	Sorghum	cytosol, mitochondrion	84.17	84.87
Os08t0436800-01	Rice	plastid	83.33	84.75
Os08t0156800-01	Rice	nucleus	83.33	84.75
Zm00001d020450_P001	Maize	plastid	84.17	84.17
GSMUA_Achr7P18110_001	Banana	cytosol	83.33	83.33
Zm00001d032181_P001	Maize	mitochondrion	82.5	83.19
EES13382	Sorghum	cytosol	82.5	83.19
Zm00001d024571_P001	Maize	cytosol	81.67	82.35
GSMUA_Achr11P...	Banana	cytosol	80.83	80.83
PGSC0003DMT400083150	Potato	cytosol	69.17	77.57
Os09t0413500-01	Rice	plastid	38.33	74.19
Zm00001d049552_P007	Maize	cytosol	81.67	73.68
VIT_14s0108g00850.t01	Wine grape	cytosol	71.67	61.43
HORVU2Hr1G080340.2	Barley	mitochondrion	68.33	56.16
Zm00001d038662_P001	Maize	cytosol, mitochondrion	40.83	53.26
Zm00001d007386_P001	Maize	plastid	39.17	33.1
CDY44427	Canola	cytosol	7.5	9.78

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:A0A078JHV8	UniProt:A0A078JHV8	EnsemblPlants:CDY65271	ProteinID:CDY65271
ProteinID:CDY65271.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00045497001	InterPro:IPR038562	PFAM:PF01199
PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf
InterPro:Ribosomal_L34e_CS	UniParc:UPI00025461EB	SEG:seg	:	:	:

Description

BnaCnng46360DBnaCnng46360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHV8]

Coordinates

chrLK034710:-:7904..8939

Molecular Weight (calculated)

13759.1 Da

IEP (calculated)

12.128

GRAVY (calculated)

-0.721

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IHGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSALAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKVATKA

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.