Factsheet for VIT_14s0108g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28900.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083150	Potato	cytosol	63.57	83.18
VIT_01s0026g02410.t01	Wine grape	cytosol	69.29	80.83
KRH40107	Soybean	endoplasmic reticulum	67.86	79.17
KRH01164	Soybean	cytosol	67.86	79.17
Solyc06g069860.2.1	Tomato	nucleus	67.14	78.33
PGSC0003DMT400080291	Potato	cytosol	67.14	78.33
Solyc05g007560.2.1	Tomato	nucleus	66.43	77.5
PGSC0003DMT400003592	Potato	cytosol	65.71	76.67
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	65.71	76.67
Zm00001d024571_P001	Maize	cytosol	64.29	75.63
EES13382	Sorghum	cytosol	64.29	75.63
EER98897	Sorghum	cytosol, mitochondrion	64.29	75.63
Zm00001d020450_P001	Maize	plastid	64.29	75.0
Zm00001d032181_P001	Maize	mitochondrion	63.57	74.79
EES15047	Sorghum	cytosol	63.57	74.79
Zm00001d050411_P001	Maize	cytosol	63.57	74.79
Os08t0436800-01	Rice	plastid	62.86	74.58
Os08t0156800-01	Rice	nucleus	62.86	74.58
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	63.57	74.17
TraesCS5A01G227800.1	Wheat	cytosol	62.86	73.95
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	62.86	73.95
TraesCS5D01G239800.1	Wheat	cytosol	62.86	73.95
TraesCS7A01G300500.1	Wheat	golgi, unclear	62.86	73.95
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	62.86	73.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	62.86	73.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	62.86	73.33
GSMUA_Achr6P14630_001	Banana	plasma membrane	62.86	73.33
GSMUA_Achr7P18110_001	Banana	cytosol	62.86	73.33
GSMUA_Achr8P17000_001	Banana	cytosol	62.86	73.33
AT1G69620.1	Thale cress	cytosol	62.14	73.11
TraesCS2A01G339200.1	Wheat	cytosol	62.14	73.11
TraesCS7D01G296300.1	Wheat	cytosol	62.14	73.11
TraesCS7B01G201400.1	Wheat	cytosol	62.14	73.11
TraesCS2D01G323900.1	Wheat	unclear	62.14	73.11
TraesCS2B01G342800.1	Wheat	cytosol	62.14	73.11
HORVU7Hr1G071240.1	Barley	cytosol	62.14	73.11
CDY01759	Canola	cytosol, mitochondrion, plastid	62.14	72.5
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	62.14	72.5
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	62.14	72.5
CDX95913	Canola	cytosol, mitochondrion, plastid	62.14	72.5
CDY04284	Canola	cytosol, mitochondrion, plastid	62.14	72.5
CDY07341	Canola	extracellular	62.14	72.5
CDY44081	Canola	cytosol, mitochondrion, plastid	62.14	72.5
CDY68374	Canola	cytosol, mitochondrion, plastid	62.14	72.5
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	62.14	72.5
CDY46432	Canola	cytosol	61.43	71.67
CDY20010	Canola	cytosol, mitochondrion, plastid	61.43	71.67
CDY65271	Canola	cytosol	61.43	71.67
CDY00108	Canola	extracellular	61.43	71.67
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	61.43	71.67
Bra016295.1-P	Field mustard	cytosol	61.43	71.67
AT3G28900.1	Thale cress	cytosol	61.43	71.67
GSMUA_Achr11P...	Banana	cytosol	60.0	70.0
Zm00001d049552_P007	Maize	cytosol	63.57	66.92
Zm00001d038662_P001	Maize	cytosol, mitochondrion	36.43	55.43
Os09t0413500-01	Rice	plastid	21.43	48.39
HORVU2Hr1G080340.2	Barley	mitochondrion	46.43	44.52
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	63.57	36.78
Zm00001d007386_P001	Maize	plastid	35.71	35.21

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	ProteinID:CCB47559	ProteinID:CCB47559.1	UniProt:F6H5T8	EMBL:FN595239
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145
PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	TIGR:TC58390
UniParc:UPI0002107EA4	ArrayExpress:VIT_14s0108g00850	EnsemblPlantsGene:VIT_14s0108g00850	EnsemblPlants:VIT_14s0108g00850.t01	unigene:Vvi.9218	RefSeq:XP_002283595
RefSeq:XP_002283595.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:29530858..29532769

Molecular Weight (calculated)

15837.1 Da

IEP (calculated)

11.080

GRAVY (calculated)

-1.100

Length

140 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL VYQSTKKRAN GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG VLSGGAVRER YDPDNSSFLG
101: GGAKDCEKGV EDPEGKGKAS LKELKNERVI KRKGFEFYYA

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.