Factsheet for TraesCS2D01G323900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G342800.1	Wheat	cytosol	100.0	100.0
TraesCS2A01G339200.1	Wheat	cytosol	100.0	100.0
TraesCS7D01G296300.1	Wheat	cytosol	96.64	96.64
TraesCS5D01G239800.1	Wheat	cytosol	95.8	95.8
GSMUA_Achr6P14630_001	Banana	plasma membrane	94.96	94.17
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	93.28	92.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.28	92.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.28	92.5
GSMUA_Achr8P17000_001	Banana	cytosol	92.44	91.67
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	92.44	91.67
GSMUA_Achr7P18110_001	Banana	cytosol	91.6	90.83
KRH70721	Soybean	cytosol	90.76	90.0
KRH01164	Soybean	cytosol	90.76	90.0
KRH40107	Soybean	endoplasmic reticulum	90.76	90.0
KRH45923	Soybean	cytosol	90.76	90.0
KRH74856	Soybean	cytosol	90.76	90.0
KRG99078	Soybean	cytosol	89.92	89.17
VIT_01s0026g02410.t01	Wine grape	cytosol	89.92	89.17
Solyc05g007560.2.1	Tomato	nucleus	89.08	88.33
PGSC0003DMT400003592	Potato	cytosol	88.24	87.5
PGSC0003DMT400080291	Potato	cytosol	88.24	87.5
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	88.24	87.5
GSMUA_Achr11P...	Banana	cytosol	87.39	86.67
Solyc06g069860.2.1	Tomato	nucleus	87.39	86.67
AT1G69620.1	Thale cress	cytosol	86.55	86.55
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	86.55	85.83
CDY65271	Canola	cytosol	84.87	84.17
CDY46432	Canola	cytosol	84.87	84.17
Bra016295.1-P	Field mustard	cytosol	84.87	84.17
CDY01759	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDX95913	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY68374	Canola	cytosol, mitochondrion, plastid	83.19	82.5
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
CDY00108	Canola	extracellular	83.19	82.5
CDY04284	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY07341	Canola	extracellular	83.19	82.5
CDY20010	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY44081	Canola	cytosol, mitochondrion, plastid	83.19	82.5
AT3G28900.1	Thale cress	cytosol	82.35	81.67
PGSC0003DMT400083150	Potato	cytosol	69.75	77.57
HORVU2Hr1G080340.2	Barley	mitochondrion	80.67	65.75
VIT_14s0108g00850.t01	Wine grape	cytosol	73.11	62.14
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	40.91

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	PFAM:PF01199
PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf
InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:TraesCS2D01G323900	EnsemblPlants:TraesCS2D01G323900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:416932295..416933904

Molecular Weight (calculated)

13846.2 Da

IEP (calculated)

12.026

GRAVY (calculated)

-1.013

Length

119 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGRL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPT EYKRSRLSRN RRTVNRPYGG VLSGQAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKEKQPSK

Best Arabidopsis Sequence Match ( AT1G69620.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPK

Arabidopsis Description

RPL34B60S ribosomal protein L34-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.