CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28900.1	KRH16959	AT3G49580.1	21798944
AT3G28900.1	KRH53667	AT3G49580.1	21798944
AT3G28900.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01164	Soybean	cytosol	100.0	100.0
KRH74856	Soybean	cytosol	98.33	98.33
KRH70721	Soybean	cytosol	98.33	98.33
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	96.67	96.67
Solyc05g007560.2.1	Tomato	nucleus	95.83	95.83
PGSC0003DMT400080291	Potato	cytosol	95.83	95.83
PGSC0003DMT400003592	Potato	cytosol	95.83	95.83
KRG99078	Soybean	cytosol	95.0	95.0
Solyc06g069860.2.1	Tomato	nucleus	95.0	95.0
KRH45923	Soybean	cytosol	95.0	95.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	94.17	94.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.33	93.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.33	93.33
GSMUA_Achr6P14630_001	Banana	plasma membrane	93.33	93.33
GSMUA_Achr8P17000_001	Banana	cytosol	92.5	92.5
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr7P18110_001	Banana	cytosol	91.67	91.67
TraesCS2A01G339200.1	Wheat	cytosol	90.0	90.76
TraesCS2B01G342800.1	Wheat	cytosol	90.0	90.76
TraesCS2D01G323900.1	Wheat	unclear	90.0	90.76
TraesCS7A01G300500.1	Wheat	golgi, unclear	90.0	90.76
Zm00001d032181_P001	Maize	mitochondrion	90.0	90.76
Zm00001d050411_P001	Maize	cytosol	90.0	90.76
EES15047	Sorghum	cytosol	90.0	90.76
Os08t0436800-01	Rice	plastid	89.17	90.68
Os08t0156800-01	Rice	nucleus	89.17	90.68
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	90.0	90.0
GSMUA_Achr11P...	Banana	cytosol	90.0	90.0
EES13382	Sorghum	cytosol	89.17	89.92
HORVU7Hr1G071240.1	Barley	cytosol	89.17	89.92
AT1G69620.1	Thale cress	cytosol	89.17	89.92
TraesCS7D01G296300.1	Wheat	cytosol	89.17	89.92
TraesCS7B01G201400.1	Wheat	cytosol	89.17	89.92
TraesCS5D01G239800.1	Wheat	cytosol	89.17	89.92
EER98897	Sorghum	cytosol, mitochondrion	89.17	89.92
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	89.17	89.92
TraesCS5A01G227800.1	Wheat	cytosol	89.17	89.92
Zm00001d020450_P001	Maize	plastid	89.17	89.17
Zm00001d024571_P001	Maize	cytosol	88.33	89.08
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	88.33	88.33
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	88.33	88.33
CDX95913	Canola	cytosol, mitochondrion, plastid	88.33	88.33
CDY44081	Canola	cytosol, mitochondrion, plastid	88.33	88.33
CDY07341	Canola	extracellular	88.33	88.33
CDY04284	Canola	cytosol, mitochondrion, plastid	88.33	88.33
CDY01759	Canola	cytosol, mitochondrion, plastid	88.33	88.33
CDY68374	Canola	cytosol, mitochondrion, plastid	88.33	88.33
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	87.5	87.5
CDY46432	Canola	cytosol	87.5	87.5
CDY20010	Canola	cytosol, mitochondrion, plastid	87.5	87.5
AT3G28900.1	Thale cress	cytosol	87.5	87.5
CDY00108	Canola	extracellular	87.5	87.5
CDY65271	Canola	cytosol	87.5	87.5
Bra016295.1-P	Field mustard	cytosol	87.5	87.5
PGSC0003DMT400083150	Potato	cytosol	74.17	83.18
Zm00001d049552_P007	Maize	cytosol	90.0	81.2
Os09t0413500-01	Rice	plastid	40.83	79.03
VIT_14s0108g00850.t01	Wine grape	cytosol	79.17	67.86
HORVU2Hr1G080340.2	Barley	mitochondrion	71.67	58.9
Zm00001d038662_P001	Maize	cytosol, mitochondrion	44.17	57.61
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	88.33	43.8
Zm00001d007386_P001	Maize	plastid	42.5	35.92

Protein Annotations

EntrezGene:100305798	EntrezGene:100785061	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EMBL:ACUP02006021	EMBL:ACUP02011503
EMBL:BT089578	UniProt:C6SWN5	EnsemblPlantsGene:GLYMA_09G239000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562
ProteinID:KRH01164.1	EnsemblPlants:KRH40107	ProteinID:KRH40107	ProteinID:KRH40107.1	PFAM:PF01199	PRINTS:PR01250
ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS
UniParc:UPI0001B14FF5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46144841..46147221

Molecular Weight (calculated)

13734.0 Da

IEP (calculated)

12.132

GRAVY (calculated)

-0.910

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG VLSGGAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKQASKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.