Factsheet for Os09t0413500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
vacuole 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0156800-01	Rice	nucleus	90.32	47.46
Os08t0436800-01	Rice	plastid	88.71	46.61
TraesCS5D01G239800.1	Wheat	cytosol	87.1	45.38
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	87.1	45.38
TraesCS5A01G227800.1	Wheat	cytosol	87.1	45.38
EER98897	Sorghum	cytosol, mitochondrion	85.48	44.54
Zm00001d020450_P001	Maize	plastid	85.48	44.17
GSMUA_Achr6P14630_001	Banana	plasma membrane	83.87	43.33
GSMUA_Achr7P18110_001	Banana	cytosol	83.87	43.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	83.87	43.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	82.26	42.5
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	82.26	42.5
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	82.26	42.5
GSMUA_Achr8P17000_001	Banana	cytosol	82.26	42.5
Solyc05g007560.2.1	Tomato	nucleus	80.65	41.67
VIT_01s0026g02410.t01	Wine grape	cytosol	79.03	40.83
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	79.03	40.83
PGSC0003DMT400080291	Potato	cytosol	79.03	40.83
PGSC0003DMT400003592	Potato	cytosol	79.03	40.83
KRH74856	Soybean	cytosol	79.03	40.83
KRH70721	Soybean	cytosol	79.03	40.83
KRH40107	Soybean	endoplasmic reticulum	79.03	40.83
KRH01164	Soybean	cytosol	79.03	40.83
KRG99078	Soybean	cytosol	79.03	40.83
AT1G69620.1	Thale cress	cytosol	77.42	40.34
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	77.42	40.0
Solyc06g069860.2.1	Tomato	nucleus	77.42	40.0
KRH45923	Soybean	cytosol	77.42	40.0
CDY01759	Canola	cytosol, mitochondrion, plastid	74.19	38.33
CDY46432	Canola	cytosol	74.19	38.33
Bra016295.1-P	Field mustard	cytosol	74.19	38.33
CDY65271	Canola	cytosol	74.19	38.33
CDX95913	Canola	cytosol, mitochondrion, plastid	74.19	38.33
GSMUA_Achr11P...	Banana	cytosol	74.19	38.33
CDY68374	Canola	cytosol, mitochondrion, plastid	72.58	37.5
CDY00108	Canola	extracellular	72.58	37.5
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	72.58	37.5
CDY44081	Canola	cytosol, mitochondrion, plastid	72.58	37.5
CDY20010	Canola	cytosol, mitochondrion, plastid	72.58	37.5
CDY07341	Canola	extracellular	72.58	37.5
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	72.58	37.5
AT3G28900.1	Thale cress	cytosol	72.58	37.5
CDY04284	Canola	cytosol, mitochondrion, plastid	72.58	37.5
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	72.58	37.5
PGSC0003DMT400083150	Potato	cytosol	43.55	25.23
VIT_14s0108g00850.t01	Wine grape	cytosol	48.39	21.43
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	70.97	18.18

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	UniProt:A0A0P0XLP8	ProteinID:BAT08063.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR038562	EnsemblPlantsGene:Os09g0413500	EnsemblPlants:Os09t0413500-01	PFAM:PF01199	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18
InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	UniParc:UPI0000DD971D	SEG:seg	:	:

Description

Similar to 60S ribosomal protein L34. (Os09t0413500-01);Non-protein coding transcript. (Os09t0413500-02)

Coordinates

chr9:-:14691187..14693114

Molecular Weight (calculated)

7040.6 Da

IEP (calculated)

11.856

GRAVY (calculated)

-0.858

Length

62 amino acids

Sequence
(BLAST)

1: SDAGRQDSRL SRNRRTVNRP YGGVLSGTAV RERIIRAFLV EEQKIVKKVL KIQKTKDKSA SK

Best Arabidopsis Sequence Match ( AT1G69620.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPK

Arabidopsis Description

RPL34B60S ribosomal protein L34-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.