CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	100.0	100.0
CDY07341	Canola	extracellular	100.0	100.0
CDY44081	Canola	cytosol, mitochondrion, plastid	100.0	100.0
CDX95913	Canola	cytosol, mitochondrion, plastid	99.17	99.17
CDY01759	Canola	cytosol, mitochondrion, plastid	99.17	99.17
CDY68374	Canola	cytosol, mitochondrion, plastid	99.17	99.17
CDY00108	Canola	extracellular	95.83	95.83
CDY20010	Canola	cytosol, mitochondrion, plastid	95.83	95.83
AT1G69620.1	Thale cress	cytosol	95.0	95.8
CDY65271	Canola	cytosol	95.0	95.0
CDY46432	Canola	cytosol	95.0	95.0
Solyc06g069860.2.1	Tomato	nucleus	89.17	89.17
KRH40107	Soybean	endoplasmic reticulum	88.33	88.33
KRH01164	Soybean	cytosol	88.33	88.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	85.83	85.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr8P17000_001	Banana	cytosol	85.0	85.0
GSMUA_Achr6P14630_001	Banana	plasma membrane	85.0	85.0
Zm00001d050411_P001	Maize	cytosol	84.17	84.87
EES15047	Sorghum	cytosol	84.17	84.87
EER98897	Sorghum	cytosol, mitochondrion	84.17	84.87
Os08t0156800-01	Rice	nucleus	83.33	84.75
Os08t0436800-01	Rice	plastid	83.33	84.75
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	84.17	84.17
Zm00001d020450_P001	Maize	plastid	84.17	84.17
TraesCS7A01G300500.1	Wheat	golgi, unclear	83.33	84.03
GSMUA_Achr7P18110_001	Banana	cytosol	83.33	83.33
TraesCS2D01G323900.1	Wheat	unclear	82.5	83.19
Zm00001d032181_P001	Maize	mitochondrion	82.5	83.19
TraesCS7D01G296300.1	Wheat	cytosol	82.5	83.19
TraesCS7B01G201400.1	Wheat	cytosol	82.5	83.19
TraesCS5D01G239800.1	Wheat	cytosol	82.5	83.19
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	82.5	83.19
TraesCS5A01G227800.1	Wheat	cytosol	82.5	83.19
TraesCS2B01G342800.1	Wheat	cytosol	82.5	83.19
TraesCS2A01G339200.1	Wheat	cytosol	82.5	83.19
EES13382	Sorghum	cytosol	82.5	83.19
HORVU7Hr1G071240.1	Barley	cytosol	82.5	83.19
Zm00001d024571_P001	Maize	cytosol	81.67	82.35
GSMUA_Achr11P...	Banana	cytosol	80.83	80.83
PGSC0003DMT400083150	Potato	cytosol	70.83	79.44
Zm00001d049552_P007	Maize	cytosol	81.67	73.68
Os09t0413500-01	Rice	plastid	37.5	72.58
VIT_14s0108g00850.t01	Wine grape	cytosol	72.5	62.14
HORVU2Hr1G080340.2	Barley	mitochondrion	66.67	54.79
Zm00001d038662_P001	Maize	cytosol, mitochondrion	40.83	53.26
Zm00001d007386_P001	Maize	plastid	39.17	33.1
CDY44427	Canola	cytosol	6.67	8.7

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:A0A078EUM2	UniProt:A0A078EUM2	EnsemblPlants:CDY04284	ProteinID:CDY04284
ProteinID:CDY04284.1	ProteinID:CDY07341.1	ProteinID:CDY44081.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00118041001
InterPro:IPR038562	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30
InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI0001BA87D9	SEG:seg	:

Description

BnaC06g25310DBnaA02g14450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EUM2]

Coordinates

chrLK031950:-:1007297..1008509

Molecular Weight (calculated)

13762.1 Da

IEP (calculated)

12.194

GRAVY (calculated)

-0.777

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSALAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPRS

Best Arabidopsis Sequence Match ( AT1G69620.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPK

Arabidopsis Description

RPL34B60S ribosomal protein L34-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.