Factsheet for Bra007871.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	100.0	100.0
CDY04284	Canola	cytosol, mitochondrion, plastid	100.0	100.0
CDY07341	Canola	extracellular	100.0	100.0
CDY44081	Canola	cytosol, mitochondrion, plastid	100.0	100.0
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	95.83	95.83
AT1G69620.1	Thale cress	cytosol	95.0	95.8
Bra016295.1-P	Field mustard	cytosol	95.0	95.0
Solyc06g069860.2.1	Tomato	nucleus	89.17	89.17
KRH40107	Soybean	endoplasmic reticulum	88.33	88.33
KRH01164	Soybean	cytosol	88.33	88.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	85.83	85.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr6P14630_001	Banana	plasma membrane	85.0	85.0
GSMUA_Achr8P17000_001	Banana	cytosol	85.0	85.0
EES15047	Sorghum	cytosol	84.17	84.87
Zm00001d050411_P001	Maize	cytosol	84.17	84.87
EER98897	Sorghum	cytosol, mitochondrion	84.17	84.87
Os08t0156800-01	Rice	nucleus	83.33	84.75
Os08t0436800-01	Rice	plastid	83.33	84.75
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	84.17	84.17
Zm00001d020450_P001	Maize	plastid	84.17	84.17
TraesCS7A01G300500.1	Wheat	golgi, unclear	83.33	84.03
GSMUA_Achr7P18110_001	Banana	cytosol	83.33	83.33
EES13382	Sorghum	cytosol	82.5	83.19
Zm00001d032181_P001	Maize	mitochondrion	82.5	83.19
TraesCS7D01G296300.1	Wheat	cytosol	82.5	83.19
TraesCS7B01G201400.1	Wheat	cytosol	82.5	83.19
TraesCS5D01G239800.1	Wheat	cytosol	82.5	83.19
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	82.5	83.19
TraesCS5A01G227800.1	Wheat	cytosol	82.5	83.19
TraesCS2D01G323900.1	Wheat	unclear	82.5	83.19
TraesCS2B01G342800.1	Wheat	cytosol	82.5	83.19
TraesCS2A01G339200.1	Wheat	cytosol	82.5	83.19
HORVU7Hr1G071240.1	Barley	cytosol	82.5	83.19
Zm00001d024571_P001	Maize	cytosol	81.67	82.35
GSMUA_Achr11P...	Banana	cytosol	80.83	80.83
PGSC0003DMT400083150	Potato	cytosol	70.83	79.44
Zm00001d049552_P007	Maize	cytosol	81.67	73.68
Os09t0413500-01	Rice	plastid	37.5	72.58
VIT_14s0108g00850.t01	Wine grape	cytosol	72.5	62.14
HORVU2Hr1G080340.2	Barley	mitochondrion	66.67	54.79
Zm00001d038662_P001	Maize	cytosol, mitochondrion	40.83	53.26
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	95.83	47.52
Bra033066.1-P	Field mustard	cytosol	42.5	36.96
Zm00001d007386_P001	Maize	plastid	39.17	33.1

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EnsemblPlantsGene:Bra007871	EnsemblPlants:Bra007871.1	EnsemblPlants:Bra007871.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038562	UniProt:M4CIF7	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145
PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI0001BA87D9
SEG:seg	:	:	:	:	:

Description

AT1G69620 (E=2e-048) RPL34 | RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome

Coordinates

chrA02:+:11444604..11445474

Molecular Weight (calculated)

13762.1 Da

IEP (calculated)

12.194

GRAVY (calculated)

-0.777

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSALAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPRS

Best Arabidopsis Sequence Match ( AT1G69620.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPK

Arabidopsis Description

RPL34B60S ribosomal protein L34-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.