Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 1
- mitochondrion 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g096760.1.1 | |
| Solyc03g096770.1.1 | |
| Solyc03g096780.1.1 | |
| Solyc06g072990.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007560.2.1 | Tomato | nucleus | 97.5 | 97.5 |
| Solyc02g087930.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 95.0 | 95.0 |
| KRH40107 | Soybean | endoplasmic reticulum | 95.0 | 95.0 |
| KRH01164 | Soybean | cytosol | 95.0 | 95.0 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 90.83 | 90.83 |
| GSMUA_Achr8P17000_001 | Banana | cytosol | 90.0 | 90.0 |
| GSMUA_Achr7P18110_001 | Banana | cytosol | 90.0 | 90.0 |
| GSMUA_Achr6P14630_001 | Banana | plasma membrane | 90.0 | 90.0 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 90.0 | 90.0 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 90.0 | 90.0 |
| CDY68374 | Canola | cytosol, mitochondrion, plastid | 90.0 | 90.0 |
| Zm00001d050411_P001 | Maize | cytosol | 89.17 | 89.92 |
| EES15047 | Sorghum | cytosol | 89.17 | 89.92 |
| CDY44081 | Canola | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| CDY07341 | Canola | extracellular | 89.17 | 89.17 |
| Bra003991.1-P | Field mustard | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| CDY04284 | Canola | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| CDY01759 | Canola | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| Bra007871.1-P | Field mustard | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| CDX95913 | Canola | cytosol, mitochondrion, plastid | 89.17 | 89.17 |
| GSMUA_Achr3P20070_001 | Banana | cytosol, mitochondrion | 89.17 | 89.17 |
| TraesCS7A01G300500.1 | Wheat | golgi, unclear | 88.33 | 89.08 |
| AT1G69620.1 | Thale cress | cytosol | 88.33 | 89.08 |
| Os08t0436800-01 | Rice | plastid | 87.5 | 88.98 |
| Os08t0156800-01 | Rice | nucleus | 87.5 | 88.98 |
| Bra039041.1-P | Field mustard | cytosol, mitochondrion, plastid | 88.33 | 88.33 |
| AT1G26880.1 | Thale cress | cytosol, mitochondrion, plastid | 88.33 | 88.33 |
| CDY20010 | Canola | cytosol, mitochondrion, plastid | 88.33 | 88.33 |
| CDY00108 | Canola | extracellular | 88.33 | 88.33 |
| HORVU7Hr1G071240.1 | Barley | cytosol | 87.5 | 88.24 |
| Zm00001d032181_P001 | Maize | mitochondrion | 87.5 | 88.24 |
| EES13382 | Sorghum | cytosol | 87.5 | 88.24 |
| TraesCS7D01G296300.1 | Wheat | cytosol | 87.5 | 88.24 |
| TraesCS7B01G201400.1 | Wheat | cytosol | 87.5 | 88.24 |
| CDY65271 | Canola | cytosol | 87.5 | 87.5 |
| CDY46432 | Canola | cytosol | 87.5 | 87.5 |
| AT3G28900.1 | Thale cress | cytosol | 87.5 | 87.5 |
| Bra016295.1-P | Field mustard | cytosol | 87.5 | 87.5 |
| TraesCS2A01G339200.1 | Wheat | cytosol | 86.67 | 87.39 |
| TraesCS2B01G342800.1 | Wheat | cytosol | 86.67 | 87.39 |
| TraesCS2D01G323900.1 | Wheat | unclear | 86.67 | 87.39 |
| TraesCS5A01G227800.1 | Wheat | cytosol | 86.67 | 87.39 |
| TraesCS5B01G226600.1 | Wheat | golgi, plastid, unclear | 86.67 | 87.39 |
| TraesCS5D01G239800.1 | Wheat | cytosol | 86.67 | 87.39 |
| EER98897 | Sorghum | cytosol, mitochondrion | 86.67 | 87.39 |
| Zm00001d020450_P001 | Maize | plastid | 86.67 | 86.67 |
| Zm00001d024571_P001 | Maize | cytosol | 85.83 | 86.55 |
| PGSC0003DMT400083150 | Potato | cytosol | 76.67 | 85.98 |
| GSMUA_Achr11P... | Banana | cytosol | 85.83 | 85.83 |
| Zm00001d049552_P007 | Maize | cytosol | 86.67 | 78.2 |
| Os09t0413500-01 | Rice | plastid | 40.0 | 77.42 |
| VIT_14s0108g00850.t01 | Wine grape | cytosol | 78.33 | 67.14 |
| HORVU2Hr1G080340.2 | Barley | mitochondrion | 68.33 | 56.16 |
| Zm00001d038662_P001 | Maize | cytosol, mitochondrion | 42.5 | 55.43 |
| Bra004400.1-P | Field mustard | cytosol, mitochondrion, plastid | 89.17 | 44.21 |
| Zm00001d007386_P001 | Maize | plastid | 40.83 | 34.51 |
Protein Annotations
| MapMan:17.1.2.1.34 | Gene3D:3.40.1800.40 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0042254 | InterPro:IPR038562 | UniProt:K4C8F8 |
| PFAM:PF01199 | PRINTS:PR01250 | ScanProsite:PS01145 | PANTHER:PTHR10759 | PANTHER:PTHR10759:SF30 | InterPro:Ribosomal_L34Ae |
| InterPro:Ribosomal_L34Ae_sf | InterPro:Ribosomal_L34e_CS | EnsemblPlantsGene:Solyc06g069860.2 | EnsemblPlants:Solyc06g069860.2.1 | UniParc:UPI0002766D2F | SEG:seg |
Description
No Description!
Coordinates
chr6:+:43498994..43500846
Molecular Weight (calculated)
13720.1 Da
IEP (calculated)
12.132
GRAVY (calculated)
-0.843
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL IYQTTKKRAN GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSGGAVRER IVRAFLVEEQ
101: KIVKKVLKIQ KAKEKLAAKS
101: KIVKKVLKIQ KAKEKLAAKS
001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA
101: KIVKKVLKLQ KAKEKVAPKA
Arabidopsis Description
RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.