Factsheet for GSMUA_Achr6P14630_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	98.33	98.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	98.33	98.33
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	98.33	98.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	97.5	97.5
GSMUA_Achr8P17000_001	Banana	cytosol	97.5	97.5
GSMUA_Achr7P18110_001	Banana	cytosol	96.67	96.67
TraesCS2A01G339200.1	Wheat	cytosol	94.17	94.96
TraesCS2D01G323900.1	Wheat	unclear	94.17	94.96
TraesCS2B01G342800.1	Wheat	cytosol	94.17	94.96
HORVU7Hr1G071240.1	Barley	cytosol	93.33	94.12
TraesCS7B01G201400.1	Wheat	cytosol	93.33	94.12
TraesCS7D01G296300.1	Wheat	cytosol	93.33	94.12
KRH01164	Soybean	cytosol	93.33	93.33
KRH74856	Soybean	cytosol	93.33	93.33
KRH70721	Soybean	cytosol	93.33	93.33
KRH40107	Soybean	endoplasmic reticulum	93.33	93.33
TraesCS7A01G300500.1	Wheat	golgi, unclear	92.5	93.28
Os08t0156800-01	Rice	nucleus	91.67	93.22
Os08t0436800-01	Rice	plastid	91.67	93.22
GSMUA_Achr11P...	Banana	cytosol	92.5	92.5
Solyc05g007560.2.1	Tomato	nucleus	92.5	92.5
VIT_01s0026g02410.t01	Wine grape	cytosol	92.5	92.5
EES13382	Sorghum	cytosol	91.67	92.44
TraesCS5A01G227800.1	Wheat	cytosol	91.67	92.44
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	91.67	92.44
TraesCS5D01G239800.1	Wheat	cytosol	91.67	92.44
KRH45923	Soybean	cytosol	91.67	91.67
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	91.67	91.67
Zm00001d050411_P001	Maize	cytosol	90.83	91.6
EES15047	Sorghum	cytosol	90.83	91.6
KRG99078	Soybean	cytosol	90.83	90.83
PGSC0003DMT400080291	Potato	cytosol	90.83	90.83
PGSC0003DMT400003592	Potato	cytosol	90.83	90.83
EER98897	Sorghum	cytosol, mitochondrion	90.0	90.76
Zm00001d024571_P001	Maize	cytosol	90.0	90.76
Zm00001d020450_P001	Maize	plastid	90.0	90.0
Solyc06g069860.2.1	Tomato	nucleus	90.0	90.0
Zm00001d032181_P001	Maize	mitochondrion	89.17	89.92
AT1G69620.1	Thale cress	cytosol	89.17	89.92
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	89.17	89.17
CDY65271	Canola	cytosol	86.67	86.67
CDY46432	Canola	cytosol	86.67	86.67
Bra016295.1-P	Field mustard	cytosol	86.67	86.67
CDY01759	Canola	cytosol, mitochondrion, plastid	85.83	85.83
AT3G28900.1	Thale cress	cytosol	85.83	85.83
CDX95913	Canola	cytosol, mitochondrion, plastid	85.83	85.83
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	85.0	85.0
CDY68374	Canola	cytosol, mitochondrion, plastid	85.0	85.0
CDY44081	Canola	cytosol, mitochondrion, plastid	85.0	85.0
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	85.0	85.0
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	85.0	85.0
CDY00108	Canola	extracellular	85.0	85.0
CDY20010	Canola	cytosol, mitochondrion, plastid	85.0	85.0
CDY04284	Canola	cytosol, mitochondrion, plastid	85.0	85.0
CDY07341	Canola	extracellular	85.0	85.0
Os09t0413500-01	Rice	plastid	43.33	83.87
Zm00001d049552_P007	Maize	cytosol	90.0	81.2
PGSC0003DMT400083150	Potato	cytosol	70.0	78.5
VIT_14s0108g00850.t01	Wine grape	cytosol	73.33	62.86
HORVU2Hr1G080340.2	Barley	mitochondrion	75.0	61.64
Zm00001d038662_P001	Maize	cytosol, mitochondrion	44.17	57.61
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	84.17	41.74
Zm00001d007386_P001	Maize	plastid	42.5	35.92

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G14630_001	EnsemblPlants:GSMUA_Achr6P14630_001
EnsemblPlants:GSMUA_Achr6T14630_001	InterPro:IPR038562	UniProt:M0T711	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145
PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI0002952A46
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L34 [Source:GMGC_GENE;Acc:GSMUA_Achr6G14630_001]

Coordinates

chr6:-:9703032..9705429

Molecular Weight (calculated)

13824.0 Da

IEP (calculated)

12.093

GRAVY (calculated)

-0.913

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGRL VYQYTNKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKQASKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.