Factsheet for Os08t0436800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 21433289
nucleus: 23777608
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0156800-01	Rice	nucleus	99.15	99.15
Zm00001d050411_P001	Maize	cytosol	98.31	97.48
EES15047	Sorghum	cytosol	98.31	97.48
Zm00001d032181_P001	Maize	mitochondrion	96.61	95.8
GSMUA_Achr8P17000_001	Banana	cytosol	93.22	91.67
GSMUA_Achr6P14630_001	Banana	plasma membrane	93.22	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.22	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.22	91.67
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	92.37	90.83
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	91.53	90.0
GSMUA_Achr7P18110_001	Banana	cytosol	91.53	90.0
KRH74856	Soybean	cytosol	90.68	89.17
KRH70721	Soybean	cytosol	90.68	89.17
KRH40107	Soybean	endoplasmic reticulum	90.68	89.17
KRH01164	Soybean	cytosol	90.68	89.17
KRG99078	Soybean	cytosol	90.68	89.17
Os09t0413500-01	Rice	plastid	46.61	88.71
VIT_01s0026g02410.t01	Wine grape	cytosol	89.83	88.33
Solyc05g007560.2.1	Tomato	nucleus	89.83	88.33
KRH45923	Soybean	cytosol	89.83	88.33
Solyc06g069860.2.1	Tomato	nucleus	88.98	87.5
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	88.98	87.5
PGSC0003DMT400080291	Potato	cytosol	88.98	87.5
PGSC0003DMT400003592	Potato	cytosol	88.98	87.5
GSMUA_Achr11P...	Banana	cytosol	87.29	85.83
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	87.29	85.83
AT1G69620.1	Thale cress	cytosol	86.44	85.71
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	85.59	84.17
CDX95913	Canola	cytosol, mitochondrion, plastid	85.59	84.17
CDY00108	Canola	extracellular	85.59	84.17
CDY01759	Canola	cytosol, mitochondrion, plastid	85.59	84.17
CDY20010	Canola	cytosol, mitochondrion, plastid	85.59	84.17
CDY65271	Canola	cytosol	84.75	83.33
CDY04284	Canola	cytosol, mitochondrion, plastid	84.75	83.33
AT3G28900.1	Thale cress	cytosol	84.75	83.33
CDY07341	Canola	extracellular	84.75	83.33
CDY44081	Canola	cytosol, mitochondrion, plastid	84.75	83.33
CDY46432	Canola	cytosol	84.75	83.33
CDY68374	Canola	cytosol, mitochondrion, plastid	84.75	83.33
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	84.75	83.33
Bra016295.1-P	Field mustard	cytosol	84.75	83.33
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	84.75	83.33
PGSC0003DMT400083150	Potato	cytosol	71.19	78.5
VIT_14s0108g00850.t01	Wine grape	cytosol	74.58	62.86
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	83.9	40.91

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EntrezGene:4345669	ProteinID:BAD10146.1	ProteinID:BAF23804.1	ProteinID:BAT05600.1
ProteinID:EAZ42859.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	EnsemblPlantsGene:Os08g0436800	EnsemblPlants:Os08t0436800-01
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	UniProt:Q6Z537
InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI000023B016	RefSeq:XP_015648394.1	SEG:seg

Description

Similar to 60S ribosomal protein L34. (Os08t0436800-01)

Coordinates

chr8:-:21221307..21223052

Molecular Weight (calculated)

13634.9 Da

IEP (calculated)

12.026

GRAVY (calculated)

-0.918

Length

118 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGRL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPA EYKRSRLSRN RRTVNRPYGG VLSGTAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKDKTAK

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.