Factsheet for PGSC0003DMT400003592

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	99.17	99.17
PGSC0003DMT400080291	Potato	cytosol	98.33	98.33
KRH40107	Soybean	endoplasmic reticulum	95.83	95.83
KRH01164	Soybean	cytosol	95.83	95.83
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr6P14630_001	Banana	plasma membrane	90.83	90.83
GSMUA_Achr8P17000_001	Banana	cytosol	90.0	90.0
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	90.0	90.0
GSMUA_Achr7P18110_001	Banana	cytosol	89.17	89.17
Zm00001d050411_P001	Maize	cytosol	88.33	89.08
Zm00001d032181_P001	Maize	mitochondrion	88.33	89.08
EES15047	Sorghum	cytosol	88.33	89.08
Os08t0156800-01	Rice	nucleus	87.5	88.98
Os08t0436800-01	Rice	plastid	87.5	88.98
TraesCS2D01G323900.1	Wheat	unclear	87.5	88.24
TraesCS5A01G227800.1	Wheat	cytosol	87.5	88.24
EER98897	Sorghum	cytosol, mitochondrion	87.5	88.24
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	87.5	88.24
TraesCS5D01G239800.1	Wheat	cytosol	87.5	88.24
TraesCS7A01G300500.1	Wheat	golgi, unclear	87.5	88.24
TraesCS2B01G342800.1	Wheat	cytosol	87.5	88.24
TraesCS2A01G339200.1	Wheat	cytosol	87.5	88.24
Zm00001d024571_P001	Maize	cytosol	87.5	88.24
Zm00001d020450_P001	Maize	plastid	87.5	87.5
GSMUA_Achr11P...	Banana	cytosol	87.5	87.5
EES13382	Sorghum	cytosol	86.67	87.39
TraesCS7D01G296300.1	Wheat	cytosol	86.67	87.39
TraesCS7B01G201400.1	Wheat	cytosol	86.67	87.39
HORVU7Hr1G071240.1	Barley	cytosol	86.67	87.39
PGSC0003DMT400083150	Potato	cytosol	73.33	82.24
Os09t0413500-01	Rice	plastid	40.83	79.03
Zm00001d049552_P007	Maize	cytosol	87.5	78.95
VIT_14s0108g00850.t01	Wine grape	cytosol	76.67	65.71
HORVU2Hr1G080340.2	Barley	mitochondrion	69.17	56.85
Zm00001d038662_P001	Maize	cytosol, mitochondrion	42.5	55.43
Zm00001d007386_P001	Maize	plastid	40.83	34.51

Protein Annotations

EntrezGene:102585523	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562
UniProt:M0ZLZ4	PFAM:PF01199	EnsemblPlantsGene:PGSC0003DMG400001421	PGSC:PGSC0003DMG400001421	EnsemblPlants:PGSC0003DMT400003592	PRINTS:PR01250
ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS
UniParc:UPI0002954CFD	RefSeq:XP_006338455.1	SEG:seg	:	:	:

Description

60S ribosomal protein L34 [Source:PGSC_GENE;Acc:PGSC0003DMG400001421]

Coordinates

chr2:+:46252208..46254634

Molecular Weight (calculated)

13804.2 Da

IEP (calculated)

12.132

GRAVY (calculated)

-0.870

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RIVKTPGGKL IYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKLASKN

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.