Factsheet for Zm00001d032181_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050411_P001	Maize	cytosol	98.32	98.32
EES15047	Sorghum	cytosol	98.32	98.32
Os08t0436800-01	Rice	plastid	95.8	96.61
Zm00001d020450_P001	Maize	plastid	94.96	94.17
Zm00001d024571_P001	Maize	cytosol	94.12	94.12
KRH70721	Soybean	cytosol	90.76	90.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	90.76	90.0
KRH01164	Soybean	cytosol	90.76	90.0
KRH40107	Soybean	endoplasmic reticulum	90.76	90.0
KRH74856	Soybean	cytosol	90.76	90.0
KRH45923	Soybean	cytosol	89.92	89.17
KRG99078	Soybean	cytosol	89.92	89.17
VIT_01s0026g02410.t01	Wine grape	cytosol	89.92	89.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	89.92	89.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	89.92	89.17
GSMUA_Achr8P17000_001	Banana	cytosol	89.92	89.17
GSMUA_Achr6P14630_001	Banana	plasma membrane	89.92	89.17
PGSC0003DMT400003592	Potato	cytosol	89.08	88.33
PGSC0003DMT400080291	Potato	cytosol	89.08	88.33
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	89.08	88.33
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	89.08	88.33
GSMUA_Achr7P18110_001	Banana	cytosol	88.24	87.5
Solyc05g007560.2.1	Tomato	nucleus	88.24	87.5
Solyc06g069860.2.1	Tomato	nucleus	88.24	87.5
GSMUA_Achr11P...	Banana	cytosol	88.24	87.5
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	85.71	85.0
AT1G69620.1	Thale cress	cytosol	84.87	84.87
Zm00001d049552_P007	Maize	cytosol	94.12	84.21
CDY20010	Canola	cytosol, mitochondrion, plastid	84.03	83.33
AT3G28900.1	Thale cress	cytosol	84.03	83.33
CDY01759	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY00108	Canola	extracellular	84.03	83.33
CDX95913	Canola	cytosol, mitochondrion, plastid	84.03	83.33
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	84.03	83.33
CDY68374	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY65271	Canola	cytosol	83.19	82.5
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
Bra016295.1-P	Field mustard	cytosol	83.19	82.5
CDY04284	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY07341	Canola	extracellular	83.19	82.5
CDY44081	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY46432	Canola	cytosol	83.19	82.5
PGSC0003DMT400083150	Potato	cytosol	69.75	77.57
VIT_14s0108g00850.t01	Wine grape	cytosol	74.79	63.57
Zm00001d038662_P001	Maize	cytosol, mitochondrion	47.06	60.87
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	82.35	40.5
Zm00001d007386_P001	Maize	plastid	45.38	38.03

Protein Annotations

EntrezGene:100217171	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	UniProt:B4FXX2	EMBL:BT041960	EMBL:EU976484
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	ProteinID:ONM04527.1	PFAM:PF01199	PRINTS:PR01250
ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS
UniParc:UPI00017B82CC	EnsemblPlantsGene:Zm00001d032181	EnsemblPlants:Zm00001d032181_P001	EnsemblPlants:Zm00001d032181_T001	SEG:seg	:

Description

60S ribosomal protein L34-3

Coordinates

chr1:+:216009436..216011564

Molecular Weight (calculated)

13673.1 Da

IEP (calculated)

11.947

GRAVY (calculated)

-0.830

Length

119 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGKL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPA EYKRSRLPRS RRTVNRPYGG VLSGIAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKDKTAAK

Best Arabidopsis Sequence Match ( AT3G28900.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTNKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLARN ERTVNRAYGG VLSGVAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKTAPKS

Arabidopsis Description

RPL34C60S ribosomal protein L34-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.