Factsheet for PGSC0003DMT400083150

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28900.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT3G28900.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT3G28900.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT3G28900.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069860.2.1	Tomato	nucleus	85.98	76.67
PGSC0003DMT400080291	Potato	cytosol	84.11	75.0
KRH40107	Soybean	endoplasmic reticulum	83.18	74.17
KRH01164	Soybean	cytosol	83.18	74.17
PGSC0003DMT400003592	Potato	cytosol	82.24	73.33
AT1G69620.1	Thale cress	cytosol	79.44	71.43
Zm00001d050411_P001	Maize	cytosol	79.44	71.43
EES15047	Sorghum	cytosol	79.44	71.43
EER98897	Sorghum	cytosol, mitochondrion	79.44	71.43
Os08t0436800-01	Rice	plastid	78.5	71.19
Os08t0156800-01	Rice	nucleus	78.5	71.19
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	79.44	70.83
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	79.44	70.83
Zm00001d020450_P001	Maize	plastid	79.44	70.83
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	79.44	70.83
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	79.44	70.83
CDX95913	Canola	cytosol, mitochondrion, plastid	79.44	70.83
CDY68374	Canola	cytosol, mitochondrion, plastid	79.44	70.83
CDY07341	Canola	extracellular	79.44	70.83
CDY01759	Canola	cytosol, mitochondrion, plastid	79.44	70.83
CDY44081	Canola	cytosol, mitochondrion, plastid	79.44	70.83
CDY04284	Canola	cytosol, mitochondrion, plastid	79.44	70.83
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	78.5	70.59
TraesCS5A01G227800.1	Wheat	cytosol	78.5	70.59
TraesCS5D01G239800.1	Wheat	cytosol	78.5	70.59
TraesCS7A01G300500.1	Wheat	golgi, unclear	78.5	70.59
EES13382	Sorghum	cytosol	78.5	70.59
GSMUA_Achr8P17000_001	Banana	cytosol	78.5	70.0
GSMUA_Achr6P14630_001	Banana	plasma membrane	78.5	70.0
CDY00108	Canola	extracellular	78.5	70.0
CDY20010	Canola	cytosol, mitochondrion, plastid	78.5	70.0
GSMUA_Achr7P18110_001	Banana	cytosol	78.5	70.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	78.5	70.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	78.5	70.0
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	78.5	70.0
TraesCS7B01G201400.1	Wheat	cytosol	77.57	69.75
TraesCS2D01G323900.1	Wheat	unclear	77.57	69.75
TraesCS2B01G342800.1	Wheat	cytosol	77.57	69.75
TraesCS2A01G339200.1	Wheat	cytosol	77.57	69.75
Zm00001d032181_P001	Maize	mitochondrion	77.57	69.75
TraesCS7D01G296300.1	Wheat	cytosol	77.57	69.75
HORVU7Hr1G071240.1	Barley	cytosol	77.57	69.75
Zm00001d024571_P001	Maize	cytosol	77.57	69.75
CDY65271	Canola	cytosol	77.57	69.17
AT3G28900.1	Thale cress	cytosol	77.57	69.17
Bra016295.1-P	Field mustard	cytosol	77.57	69.17
CDY46432	Canola	cytosol	77.57	69.17
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	77.57	69.17
GSMUA_Achr11P...	Banana	cytosol	73.83	65.83
VIT_14s0108g00850.t01	Wine grape	cytosol	83.18	63.57
Zm00001d049552_P007	Maize	cytosol	77.57	62.41
Zm00001d038662_P001	Maize	cytosol, mitochondrion	46.73	54.35
Os09t0413500-01	Rice	plastid	25.23	43.55
HORVU2Hr1G080340.2	Barley	mitochondrion	57.01	41.78
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	79.44	35.12
Zm00001d007386_P001	Maize	plastid	45.79	34.51

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	UniProt:M1D6L0
PFAM:PF01199	EnsemblPlantsGene:PGSC0003DMG400033080	PGSC:PGSC0003DMG400033080	EnsemblPlants:PGSC0003DMT400083150	PRINTS:PR01250	ScanProsite:PS01145
PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI00029674FE

Description

60S ribosomal protein L34 [Source:PGSC_GENE;Acc:PGSC0003DMG400033080]

Coordinates

chr6:+:51703538..51705496

Molecular Weight (calculated)

12278.2 Da

IEP (calculated)

12.001

GRAVY (calculated)

-0.698

Length

107 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL IYQTTKKRAN GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSGGAVRER FVLLNACWLV
101: HVCYMSP

Best Arabidopsis Sequence Match ( AT1G26880.2 )
(BLAST)

1: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER FVVHLT

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.