Factsheet for Zm00001d020450_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98897	Sorghum	cytosol, mitochondrion	99.17	100.0
TraesCS5A01G227800.1	Wheat	cytosol	96.67	97.48
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	96.67	97.48
TraesCS5D01G239800.1	Wheat	cytosol	96.67	97.48
Zm00001d050411_P001	Maize	cytosol	95.83	96.64
Zm00001d024571_P001	Maize	cytosol	95.0	95.8
Zm00001d032181_P001	Maize	mitochondrion	94.17	94.96
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr6P14630_001	Banana	plasma membrane	90.0	90.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.0	90.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.0	90.0
KRH74856	Soybean	cytosol	89.17	89.17
KRH70721	Soybean	cytosol	89.17	89.17
KRH40107	Soybean	endoplasmic reticulum	89.17	89.17
KRH01164	Soybean	cytosol	89.17	89.17
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	89.17	89.17
GSMUA_Achr8P17000_001	Banana	cytosol	89.17	89.17
VIT_01s0026g02410.t01	Wine grape	cytosol	88.33	88.33
Solyc05g007560.2.1	Tomato	nucleus	88.33	88.33
GSMUA_Achr7P18110_001	Banana	cytosol	88.33	88.33
KRG99078	Soybean	cytosol	88.33	88.33
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	87.5	87.5
PGSC0003DMT400080291	Potato	cytosol	87.5	87.5
PGSC0003DMT400003592	Potato	cytosol	87.5	87.5
KRH45923	Soybean	cytosol	87.5	87.5
Solyc06g069860.2.1	Tomato	nucleus	86.67	86.67
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	86.67	86.67
AT1G69620.1	Thale cress	cytosol	85.83	86.55
GSMUA_Achr11P...	Banana	cytosol	85.83	85.83
Zm00001d049552_P007	Maize	cytosol	95.0	85.71
Os09t0413500-01	Rice	plastid	44.17	85.48
CDY00108	Canola	extracellular	85.0	85.0
CDY01759	Canola	cytosol, mitochondrion, plastid	85.0	85.0
CDX95913	Canola	cytosol, mitochondrion, plastid	85.0	85.0
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	85.0	85.0
CDY20010	Canola	cytosol, mitochondrion, plastid	85.0	85.0
CDY68374	Canola	cytosol, mitochondrion, plastid	84.17	84.17
AT3G28900.1	Thale cress	cytosol	84.17	84.17
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	84.17	84.17
CDY65271	Canola	cytosol	84.17	84.17
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	84.17	84.17
Bra016295.1-P	Field mustard	cytosol	84.17	84.17
CDY46432	Canola	cytosol	84.17	84.17
CDY44081	Canola	cytosol, mitochondrion, plastid	84.17	84.17
CDY07341	Canola	extracellular	84.17	84.17
CDY04284	Canola	cytosol, mitochondrion, plastid	84.17	84.17
PGSC0003DMT400083150	Potato	cytosol	70.83	79.44
VIT_14s0108g00850.t01	Wine grape	cytosol	75.0	64.29
Zm00001d038662_P001	Maize	cytosol, mitochondrion	46.67	60.87
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	84.17	41.74
Zm00001d007386_P001	Maize	plastid	45.0	38.03

Protein Annotations

EntrezGene:100193910	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	UniProt:B4FGQ6	EMBL:BT036294	EMBL:EU952396
EMBL:EU952506	EMBL:EU955235	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	ProteinID:ONM54955.1
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae
InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI00017B6F98	EnsemblPlantsGene:Zm00001d020450	EnsemblPlants:Zm00001d020450_P001	EnsemblPlants:Zm00001d020450_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L34-3

Coordinates

chr7:-:115280591..115282707

Molecular Weight (calculated)

13838.2 Da

IEP (calculated)

11.955

GRAVY (calculated)

-0.964

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGKL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPA EYKRSRLSRN RRTVNRPYGG VLSGTAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KTKDKTSSKK

Best Arabidopsis Sequence Match ( AT1G26880.2 )
(BLAST)

1: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER FVVHLT

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.