Factsheet for VIT_01s0026g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	93.33	93.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr6P14630_001	Banana	plasma membrane	92.5	92.5
GSMUA_Achr7P18110_001	Banana	cytosol	92.5	92.5
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr8P17000_001	Banana	cytosol	91.67	91.67
TraesCS2A01G339200.1	Wheat	cytosol	89.17	89.92
Zm00001d050411_P001	Maize	cytosol	89.17	89.92
Zm00001d032181_P001	Maize	mitochondrion	89.17	89.92
TraesCS7A01G300500.1	Wheat	golgi, unclear	89.17	89.92
TraesCS2D01G323900.1	Wheat	unclear	89.17	89.92
TraesCS2B01G342800.1	Wheat	cytosol	89.17	89.92
EES15047	Sorghum	cytosol	89.17	89.92
Os08t0436800-01	Rice	plastid	88.33	89.83
Os08t0156800-01	Rice	nucleus	88.33	89.83
GSMUA_Achr11P...	Banana	cytosol	89.17	89.17
EES13382	Sorghum	cytosol	88.33	89.08
TraesCS7D01G296300.1	Wheat	cytosol	88.33	89.08
TraesCS7B01G201400.1	Wheat	cytosol	88.33	89.08
TraesCS5D01G239800.1	Wheat	cytosol	88.33	89.08
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	88.33	89.08
TraesCS5A01G227800.1	Wheat	cytosol	88.33	89.08
HORVU7Hr1G071240.1	Barley	cytosol	88.33	89.08
EER98897	Sorghum	cytosol, mitochondrion	88.33	89.08
Zm00001d020450_P001	Maize	plastid	88.33	88.33
Zm00001d024571_P001	Maize	cytosol	87.5	88.24
Zm00001d049552_P007	Maize	cytosol	89.17	80.45
Os09t0413500-01	Rice	plastid	40.83	79.03
VIT_14s0108g00850.t01	Wine grape	cytosol	80.83	69.29
HORVU2Hr1G080340.2	Barley	mitochondrion	70.83	58.22
Zm00001d038662_P001	Maize	cytosol, mitochondrion	43.33	56.52
Zm00001d007386_P001	Maize	plastid	41.67	35.21

Protein Annotations

EntrezGene:100241433	wikigene:100241433	EntrezGene:100252617	wikigene:100252617	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40
UniProt:A5C1J0	EMBL:AM478818	ProteinID:CAN75201	ProteinID:CAN75201.1	ProteinID:CBI31959	ProteinID:CBI31959.3
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	EntrezGene:LOC100241433	wikigene:LOC100241433
EntrezGene:LOC100252617	wikigene:LOC100252617	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759
PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	TIGR:TC54645	TIGR:TC65291
UniParc:UPI00015222C3	ArrayExpress:VIT_01s0026g02410	EnsemblPlantsGene:VIT_01s0026g02410	EnsemblPlants:VIT_01s0026g02410.t01	unigene:Vvi.10242	RefSeq:XP_002273676
RefSeq:XP_002273676.1	RefSeq:XP_002283595.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:11978955..11983233

Molecular Weight (calculated)

13747.0 Da

IEP (calculated)

12.132

GRAVY (calculated)

-0.933

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL VYQSTKKRAN GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG VLSGGAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKQASKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.