Factsheet for TraesCS7A01G300500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G071240.1	Barley	cytosol	99.16	99.16
TraesCS7D01G296300.1	Wheat	cytosol	99.16	99.16
TraesCS7B01G201400.1	Wheat	cytosol	99.16	99.16
TraesCS5A01G227800.1	Wheat	cytosol	97.48	97.48
TraesCS2A01G339200.1	Wheat	cytosol	95.8	95.8
EES13382	Sorghum	cytosol	94.96	94.96
Os08t0156800-01	Rice	nucleus	94.12	94.92
Zm00001d024571_P001	Maize	cytosol	93.28	93.28
GSMUA_Achr6P14630_001	Banana	plasma membrane	93.28	92.5
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	92.44	91.67
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	92.44	91.67
GSMUA_Achr8P17000_001	Banana	cytosol	91.6	90.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	91.6	90.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	91.6	90.83
KRH45923	Soybean	cytosol	90.76	90.0
KRH40107	Soybean	endoplasmic reticulum	90.76	90.0
KRH01164	Soybean	cytosol	90.76	90.0
Solyc05g007560.2.1	Tomato	nucleus	89.92	89.17
GSMUA_Achr7P18110_001	Banana	cytosol	89.92	89.17
KRH74856	Soybean	cytosol	89.92	89.17
KRH70721	Soybean	cytosol	89.92	89.17
VIT_01s0026g02410.t01	Wine grape	cytosol	89.92	89.17
KRG99078	Soybean	cytosol	89.92	89.17
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	89.08	88.33
Solyc06g069860.2.1	Tomato	nucleus	89.08	88.33
PGSC0003DMT400003592	Potato	cytosol	88.24	87.5
PGSC0003DMT400080291	Potato	cytosol	88.24	87.5
AT1G69620.1	Thale cress	cytosol	87.39	87.39
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	87.39	86.67
GSMUA_Achr11P...	Banana	cytosol	87.39	86.67
CDY65271	Canola	cytosol	85.71	85.0
CDY46432	Canola	cytosol	85.71	85.0
Bra016295.1-P	Field mustard	cytosol	85.71	85.0
Zm00001d049552_P007	Maize	cytosol	94.12	84.21
CDY00108	Canola	extracellular	84.87	84.17
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	84.87	84.17
CDX95913	Canola	cytosol, mitochondrion, plastid	84.87	84.17
CDY01759	Canola	cytosol, mitochondrion, plastid	84.87	84.17
CDY20010	Canola	cytosol, mitochondrion, plastid	84.87	84.17
CDY04284	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY07341	Canola	extracellular	84.03	83.33
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	84.03	83.33
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	84.03	83.33
AT3G28900.1	Thale cress	cytosol	84.03	83.33
CDY44081	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY68374	Canola	cytosol, mitochondrion, plastid	84.03	83.33
PGSC0003DMT400083150	Potato	cytosol	70.59	78.5
VIT_14s0108g00850.t01	Wine grape	cytosol	73.95	62.86
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	84.03	41.32

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	PFAM:PF01199
PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf
InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:TraesCS7A01G300500	EnsemblPlants:TraesCS7A01G300500.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:-:417148153..417150292

Molecular Weight (calculated)

13764.1 Da

IEP (calculated)

11.947

GRAVY (calculated)

-0.961

Length

119 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGKL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPT EYKRSRLSRN RRTVNRPYGG VLSGPAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKEKTTKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.