Factsheet for Bra004400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	47.52	95.83
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	47.52	95.83
CDX95913	Canola	cytosol, mitochondrion, plastid	47.52	95.83
CDY01759	Canola	cytosol, mitochondrion, plastid	47.52	95.83
Bra016295.1-P	Field mustard	cytosol	46.28	93.33
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	46.28	93.33
AT1G69620.1	Thale cress	cytosol	45.87	93.28
Solyc06g069860.2.1	Tomato	nucleus	44.21	89.17
KRH40107	Soybean	endoplasmic reticulum	43.8	88.33
KRH01164	Soybean	cytosol	43.8	88.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	42.15	85.0
EER98897	Sorghum	cytosol, mitochondrion	41.74	84.87
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	41.74	84.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	41.74	84.17
Zm00001d020450_P001	Maize	plastid	41.74	84.17
GSMUA_Achr6P14630_001	Banana	plasma membrane	41.74	84.17
GSMUA_Achr8P17000_001	Banana	cytosol	41.74	84.17
Zm00001d050411_P001	Maize	cytosol	41.32	84.03
EES15047	Sorghum	cytosol	41.32	84.03
TraesCS7A01G300500.1	Wheat	golgi, unclear	41.32	84.03
Os08t0156800-01	Rice	nucleus	40.91	83.9
Os08t0436800-01	Rice	plastid	40.91	83.9
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	41.32	83.33
EES13382	Sorghum	cytosol	40.91	83.19
TraesCS7D01G296300.1	Wheat	cytosol	40.91	83.19
TraesCS7B01G201400.1	Wheat	cytosol	40.91	83.19
TraesCS5D01G239800.1	Wheat	cytosol	40.91	83.19
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	40.91	83.19
TraesCS5A01G227800.1	Wheat	cytosol	40.91	83.19
TraesCS2D01G323900.1	Wheat	unclear	40.91	83.19
TraesCS2B01G342800.1	Wheat	cytosol	40.91	83.19
TraesCS2A01G339200.1	Wheat	cytosol	40.91	83.19
HORVU7Hr1G071240.1	Barley	cytosol	40.91	83.19
GSMUA_Achr7P18110_001	Banana	cytosol	40.91	82.5
Zm00001d024571_P001	Maize	cytosol	40.5	82.35
Zm00001d032181_P001	Maize	mitochondrion	40.5	82.35
GSMUA_Achr11P...	Banana	cytosol	39.67	80.0
PGSC0003DMT400083150	Potato	cytosol	35.12	79.44
Zm00001d049552_P007	Maize	cytosol	40.5	73.68
Os09t0413500-01	Rice	plastid	18.18	70.97
VIT_14s0108g00850.t01	Wine grape	cytosol	36.78	63.57
HORVU2Hr1G080340.2	Barley	mitochondrion	33.06	54.79
Zm00001d038662_P001	Maize	cytosol, mitochondrion	20.25	53.26
Bra033066.1-P	Field mustard	cytosol	21.07	36.96
Zm00001d007386_P001	Maize	plastid	19.42	33.1

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.30.40.10	Gene3D:3.40.1800.40	EnsemblPlantsGene:Bra004400	EnsemblPlants:Bra004400.1	EnsemblPlants:Bra004400.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974
InterPro:IPR013083	InterPro:IPR038562	UniProt:M4CJL6	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145
PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI00025418A2	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G69620 (E=1e-047) RPL34 | RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome

Coordinates

chrA07:+:18463668..18465969

Molecular Weight (calculated)

27395.8 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.854

Length

242 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSALAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKHVLAE EGSSSHPKRQ PLSSLVEDEA EPEQEAEGGE NGEEGTYQPM QNNGESCGSS DGPMPKRKTW LHQQVLYFSY GKELAHEKKC
201: SFALCYCPAP DCNYSGLYKG HYQASHMNVS CLLYATVRHE HP

Best Arabidopsis Sequence Match ( AT1G69620.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPK

Arabidopsis Description

RPL34B60S ribosomal protein L34-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.