Factsheet for TraesCS5B01G226600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G239800.1	Wheat	cytosol	100.0	100.0
TraesCS5A01G227800.1	Wheat	cytosol	100.0	100.0
EER98897	Sorghum	cytosol, mitochondrion	97.48	97.48
Zm00001d020450_P001	Maize	plastid	97.48	96.67
TraesCS7B01G201400.1	Wheat	cytosol	96.64	96.64
TraesCS2B01G342800.1	Wheat	cytosol	95.8	95.8
GSMUA_Achr6P14630_001	Banana	plasma membrane	92.44	91.67
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	91.6	90.83
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	91.6	90.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.76	90.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.76	90.0
KRH45923	Soybean	cytosol	89.92	89.17
GSMUA_Achr8P17000_001	Banana	cytosol	89.92	89.17
KRH01164	Soybean	cytosol	89.92	89.17
KRH40107	Soybean	endoplasmic reticulum	89.92	89.17
KRH70721	Soybean	cytosol	89.92	89.17
KRH74856	Soybean	cytosol	89.92	89.17
Solyc05g007560.2.1	Tomato	nucleus	89.08	88.33
KRG99078	Soybean	cytosol	89.08	88.33
GSMUA_Achr7P18110_001	Banana	cytosol	89.08	88.33
VIT_01s0026g02410.t01	Wine grape	cytosol	89.08	88.33
PGSC0003DMT400003592	Potato	cytosol	88.24	87.5
PGSC0003DMT400080291	Potato	cytosol	88.24	87.5
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	88.24	87.5
Os09t0413500-01	Rice	plastid	45.38	87.1
Solyc06g069860.2.1	Tomato	nucleus	87.39	86.67
AT1G69620.1	Thale cress	cytosol	86.55	86.55
GSMUA_Achr11P...	Banana	cytosol	86.55	85.83
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	86.55	85.83
Bra016295.1-P	Field mustard	cytosol	84.87	84.17
CDY65271	Canola	cytosol	84.87	84.17
CDY46432	Canola	cytosol	84.87	84.17
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	84.03	83.33
CDX95913	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY00108	Canola	extracellular	84.03	83.33
CDY01759	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY20010	Canola	cytosol, mitochondrion, plastid	84.03	83.33
CDY04284	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY07341	Canola	extracellular	83.19	82.5
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	82.5
AT3G28900.1	Thale cress	cytosol	83.19	82.5
CDY44081	Canola	cytosol, mitochondrion, plastid	83.19	82.5
CDY68374	Canola	cytosol, mitochondrion, plastid	83.19	82.5
PGSC0003DMT400083150	Potato	cytosol	70.59	78.5
VIT_14s0108g00850.t01	Wine grape	cytosol	73.95	62.86
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	83.19	40.91

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038562	PFAM:PF01199
PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf
InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:TraesCS5B01G226600	EnsemblPlants:TraesCS5B01G226600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:403696344..403697750

Molecular Weight (calculated)

13754.1 Da

IEP (calculated)

11.947

GRAVY (calculated)

-0.954

Length

119 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGKL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPT EYKRSRLSRN RRTVNRPYGG VLSGTAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKDKTTSK

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.