CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45923	Soybean	cytosol	96.67	96.67
KRH74856	Soybean	cytosol	95.83	95.83
KRH70721	Soybean	cytosol	95.83	95.83
KRH40107	Soybean	endoplasmic reticulum	95.0	95.0
KRH01164	Soybean	cytosol	95.0	95.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr6P14630_001	Banana	plasma membrane	90.83	90.83
GSMUA_Achr8P17000_001	Banana	cytosol	90.83	90.83
Zm00001d050411_P001	Maize	cytosol	90.0	90.76
EES15047	Sorghum	cytosol	90.0	90.76
Os08t0156800-01	Rice	nucleus	89.17	90.68
Os08t0436800-01	Rice	plastid	89.17	90.68
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	90.0	90.0
Zm00001d032181_P001	Maize	mitochondrion	89.17	89.92
TraesCS2A01G339200.1	Wheat	cytosol	89.17	89.92
TraesCS2B01G342800.1	Wheat	cytosol	89.17	89.92
TraesCS2D01G323900.1	Wheat	unclear	89.17	89.92
TraesCS7A01G300500.1	Wheat	golgi, unclear	89.17	89.92
GSMUA_Achr7P18110_001	Banana	cytosol	89.17	89.17
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	88.33	89.08
EES13382	Sorghum	cytosol	88.33	89.08
Zm00001d024571_P001	Maize	cytosol	88.33	89.08
TraesCS7D01G296300.1	Wheat	cytosol	88.33	89.08
TraesCS7B01G201400.1	Wheat	cytosol	88.33	89.08
TraesCS5D01G239800.1	Wheat	cytosol	88.33	89.08
HORVU7Hr1G071240.1	Barley	cytosol	88.33	89.08
TraesCS5A01G227800.1	Wheat	cytosol	88.33	89.08
EER98897	Sorghum	cytosol, mitochondrion	88.33	89.08
Zm00001d020450_P001	Maize	plastid	88.33	88.33
GSMUA_Achr11P...	Banana	cytosol	87.5	87.5
Zm00001d049552_P007	Maize	cytosol	88.33	79.7
Os09t0413500-01	Rice	plastid	40.83	79.03
HORVU2Hr1G080340.2	Barley	mitochondrion	70.83	58.22
Zm00001d038662_P001	Maize	cytosol, mitochondrion	44.17	57.61
Zm00001d007386_P001	Maize	plastid	42.5	35.92

Protein Annotations

EntrezGene:100499931	MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EMBL:ACUP02010960	EMBL:BT090158	UniProt:C6SYB1
EnsemblPlantsGene:GLYMA_18G119100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	EnsemblPlants:KRG99078	ProteinID:KRG99078
ProteinID:KRG99078.1	PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30
InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI0001B15777	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:14719363..14721081

Molecular Weight (calculated)

13816.1 Da

IEP (calculated)

12.128

GRAVY (calculated)

-0.902

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYNRSRLHRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKEKQALKG

Best Arabidopsis Sequence Match ( AT3G28900.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTNKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLARN ERTVNRAYGG VLSGVAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKTAPKS

Arabidopsis Description

RPL34C60S ribosomal protein L34-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.