CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020450_P001	Maize	plastid	100.0	99.17
TraesCS5D01G239800.1	Wheat	cytosol	97.48	97.48
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	97.48	97.48
TraesCS5A01G227800.1	Wheat	cytosol	97.48	97.48
EES15047	Sorghum	cytosol	96.64	96.64
EES13382	Sorghum	cytosol	96.64	96.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	91.6	90.83
GSMUA_Achr6P14630_001	Banana	plasma membrane	90.76	90.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.76	90.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.76	90.0
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	89.92	89.17
KRH74856	Soybean	cytosol	89.92	89.17
KRH70721	Soybean	cytosol	89.92	89.17
KRH40107	Soybean	endoplasmic reticulum	89.92	89.17
KRH01164	Soybean	cytosol	89.92	89.17
GSMUA_Achr8P17000_001	Banana	cytosol	89.92	89.17
VIT_01s0026g02410.t01	Wine grape	cytosol	89.08	88.33
Solyc05g007560.2.1	Tomato	nucleus	89.08	88.33
GSMUA_Achr7P18110_001	Banana	cytosol	89.08	88.33
KRG99078	Soybean	cytosol	89.08	88.33
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	88.24	87.5
PGSC0003DMT400080291	Potato	cytosol	88.24	87.5
PGSC0003DMT400003592	Potato	cytosol	88.24	87.5
KRH45923	Soybean	cytosol	88.24	87.5
Solyc06g069860.2.1	Tomato	nucleus	87.39	86.67
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	87.39	86.67
AT1G69620.1	Thale cress	cytosol	86.55	86.55
GSMUA_Achr11P...	Banana	cytosol	86.55	85.83
Os09t0413500-01	Rice	plastid	44.54	85.48
CDY01759	Canola	cytosol, mitochondrion, plastid	85.71	85.0
CDX95913	Canola	cytosol, mitochondrion, plastid	85.71	85.0
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	85.71	85.0
CDY00108	Canola	extracellular	85.71	85.0
CDY20010	Canola	cytosol, mitochondrion, plastid	85.71	85.0
CDY65271	Canola	cytosol	84.87	84.17
CDY68374	Canola	cytosol, mitochondrion, plastid	84.87	84.17
AT3G28900.1	Thale cress	cytosol	84.87	84.17
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	84.87	84.17
CDY46432	Canola	cytosol	84.87	84.17
CDY44081	Canola	cytosol, mitochondrion, plastid	84.87	84.17
CDY07341	Canola	extracellular	84.87	84.17
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	84.87	84.17
Bra016295.1-P	Field mustard	cytosol	84.87	84.17
CDY04284	Canola	cytosol, mitochondrion, plastid	84.87	84.17
PGSC0003DMT400083150	Potato	cytosol	71.43	79.44
VIT_14s0108g00850.t01	Wine grape	cytosol	75.63	64.29
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	84.87	41.74

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EntrezGene:8060244	UniProt:C5XCS8	ncoils:Coil	EnsemblPlants:EER98897
ProteinID:EER98897	ProteinID:EER98897.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	PFAM:PF01199
PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf
InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:SORBI_3002G200600	unigene:Sbi.1419	UniParc:UPI0001A83FD4	RefSeq:XP_002462376.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:59033985..59036335

Molecular Weight (calculated)

13710.0 Da

IEP (calculated)

11.947

GRAVY (calculated)

-0.939

Length

119 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGKL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPA EYKRSRLSRN RRTVNRPYGG VLSGTAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KTKDKTSSK

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.