Factsheet for AT1G26880.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G69620.1	Thale cress	cytosol	97.5	98.32
Bra016295.1-P	Field mustard	cytosol	95.0	95.0
CDY46432	Canola	cytosol	95.0	95.0
CDY65271	Canola	cytosol	95.0	95.0
AT3G28900.1	Thale cress	cytosol	92.5	92.5
KRH40107	Soybean	endoplasmic reticulum	90.0	90.0
KRH01164	Soybean	cytosol	90.0	90.0
GSMUA_Achr6P14630_001	Banana	plasma membrane	89.17	89.17
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	89.17	89.17
Solyc06g069860.2.1	Tomato	nucleus	88.33	88.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	88.33	88.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	88.33	88.33
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	88.33	88.33
GSMUA_Achr8P17000_001	Banana	cytosol	88.33	88.33
Zm00001d050411_P001	Maize	cytosol	86.67	87.39
TraesCS7A01G300500.1	Wheat	golgi, unclear	86.67	87.39
EER98897	Sorghum	cytosol, mitochondrion	86.67	87.39
EES15047	Sorghum	cytosol	86.67	87.39
Os08t0156800-01	Rice	nucleus	85.83	87.29
Os08t0436800-01	Rice	plastid	85.83	87.29
GSMUA_Achr7P18110_001	Banana	cytosol	86.67	86.67
Zm00001d020450_P001	Maize	plastid	86.67	86.67
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	85.83	86.55
TraesCS7D01G296300.1	Wheat	cytosol	85.83	86.55
TraesCS7B01G201400.1	Wheat	cytosol	85.83	86.55
TraesCS5D01G239800.1	Wheat	cytosol	85.83	86.55
TraesCS5A01G227800.1	Wheat	cytosol	85.83	86.55
TraesCS2D01G323900.1	Wheat	unclear	85.83	86.55
TraesCS2B01G342800.1	Wheat	cytosol	85.83	86.55
TraesCS2A01G339200.1	Wheat	cytosol	85.83	86.55
HORVU7Hr1G071240.1	Barley	cytosol	85.83	86.55
EES13382	Sorghum	cytosol	85.0	85.71
Zm00001d032181_P001	Maize	mitochondrion	85.0	85.71
Zm00001d024571_P001	Maize	cytosol	84.17	84.87
GSMUA_Achr11P...	Banana	cytosol	84.17	84.17
PGSC0003DMT400083150	Potato	cytosol	70.83	79.44
Os09t0413500-01	Rice	plastid	40.0	77.42
Zm00001d049552_P007	Maize	cytosol	84.17	75.94
VIT_14s0108g00850.t01	Wine grape	cytosol	73.33	62.86
HORVU2Hr1G080340.2	Barley	mitochondrion	70.0	57.53
Zm00001d038662_P001	Maize	cytosol, mitochondrion	41.67	54.35
Zm00001d007386_P001	Maize	plastid	40.0	33.8

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EntrezGene:838331	UniProt:A0A178WBL9	ProteinID:AAD14494.1	ProteinID:AEE30753.1
ArrayExpress:AT1G26880	EnsemblPlantsGene:AT1G26880	RefSeq:AT1G26880	TAIR:AT1G26880	RefSeq:AT1G26880-TAIR-G	EnsemblPlants:AT1G26880.1
TAIR:AT1G26880.1	EMBL:AY080712	EMBL:AY088495	EMBL:AY117327	EMBL:F20073	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	GO:GO:0042254
InterPro:IPR038562	RefSeq:NP_174010.1	ProteinID:OAP15494.1	PFAM:PF01199	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30
UniProt:Q42351	InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI00000017A9	SEG:seg

Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]

Coordinates

chr1:-:9315305..9316880

Molecular Weight (calculated)

13706.0 Da

IEP (calculated)

12.128

GRAVY (calculated)

-0.786

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.