Factsheet for Os08t0156800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
extracellular: 24083427
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0436800-01	Rice	plastid	99.15	99.15
EES13382	Sorghum	cytosol	98.31	97.48
HORVU7Hr1G071240.1	Barley	cytosol	95.76	94.96
TraesCS7D01G296300.1	Wheat	cytosol	95.76	94.96
TraesCS7B01G201400.1	Wheat	cytosol	95.76	94.96
TraesCS7A01G300500.1	Wheat	golgi, unclear	94.92	94.12
GSMUA_Achr8P17000_001	Banana	cytosol	93.22	91.67
GSMUA_Achr6P14630_001	Banana	plasma membrane	93.22	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.22	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.22	91.67
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	92.37	90.83
Os09t0413500-01	Rice	plastid	47.46	90.32
GSMUA_Achr7P18110_001	Banana	cytosol	91.53	90.0
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	91.53	90.0
KRH01164	Soybean	cytosol	90.68	89.17
KRH70721	Soybean	cytosol	90.68	89.17
KRG99078	Soybean	cytosol	90.68	89.17
KRH40107	Soybean	endoplasmic reticulum	90.68	89.17
KRH74856	Soybean	cytosol	90.68	89.17
KRH45923	Soybean	cytosol	89.83	88.33
Solyc05g007560.2.1	Tomato	nucleus	89.83	88.33
VIT_01s0026g02410.t01	Wine grape	cytosol	89.83	88.33
PGSC0003DMT400003592	Potato	cytosol	88.98	87.5
PGSC0003DMT400080291	Potato	cytosol	88.98	87.5
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	88.98	87.5
Solyc06g069860.2.1	Tomato	nucleus	88.98	87.5
GSMUA_Achr11P...	Banana	cytosol	87.29	85.83
AT1G26880.1	Thale cress	cytosol, mitochondrion, plastid	87.29	85.83
AT1G69620.1	Thale cress	cytosol	86.44	85.71
CDX95913	Canola	cytosol, mitochondrion, plastid	85.59	84.17
CDY01759	Canola	cytosol, mitochondrion, plastid	85.59	84.17
CDY65271	Canola	cytosol	84.75	83.33
Bra003991.1-P	Field mustard	cytosol, mitochondrion, plastid	84.75	83.33
Bra007871.1-P	Field mustard	cytosol, mitochondrion, plastid	84.75	83.33
Bra016295.1-P	Field mustard	cytosol	84.75	83.33
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	84.75	83.33
CDY00108	Canola	extracellular	84.75	83.33
CDY04284	Canola	cytosol, mitochondrion, plastid	84.75	83.33
CDY07341	Canola	extracellular	84.75	83.33
CDY20010	Canola	cytosol, mitochondrion, plastid	84.75	83.33
CDY44081	Canola	cytosol, mitochondrion, plastid	84.75	83.33
CDY46432	Canola	cytosol	84.75	83.33
CDY68374	Canola	cytosol, mitochondrion, plastid	84.75	83.33
AT3G28900.1	Thale cress	cytosol	83.9	82.5
PGSC0003DMT400083150	Potato	cytosol	71.19	78.5
VIT_14s0108g00850.t01	Wine grape	cytosol	74.58	62.86
Zm00001d038662_P001	Maize	cytosol, mitochondrion	46.61	59.78
Bra004400.1-P	Field mustard	cytosol, mitochondrion, plastid	83.9	40.91
Zm00001d007386_P001	Maize	plastid	44.92	37.32

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	EntrezGene:4344696	EntrezGene:4345669	EMBL:AK103424	ProteinID:BAC99505.1
ProteinID:BAD10146.1	ProteinID:BAF22940.1	ProteinID:BAF23804.1	ProteinID:BAT03897.1	ProteinID:BAT05600.1	ProteinID:EAZ41567.1
ProteinID:EAZ42859.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	EnsemblPlantsGene:Os08g0156800	EnsemblPlants:Os08t0156800-01
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF18	UniProt:Q6ZD96
InterPro:Ribosomal_L34Ae	InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI00001D8D28	RefSeq:XP_015648394.1	RefSeq:XP_015650819.1
SEG:seg	:	:	:	:	:

Description

Similar to 60S ribosomal protein L34. (Os08t0156800-01)

Coordinates

chr8:+:3293131..3295889

Molecular Weight (calculated)

13620.9 Da

IEP (calculated)

12.026

GRAVY (calculated)

-0.919

Length

118 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQT RVVKTPGGRL VYQYTKKRAS GPKCPVTGKK IQGIPHLRPA EYKRSRLSRN RRTVNRPYGG VLSGTAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KTKDKSAK

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.