Factsheet for Solyc02g087930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, unclear, nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003592	Potato	cytosol	99.17	99.17
Solyc05g007560.2.1	Tomato	nucleus	97.5	97.5
KRH01164	Soybean	cytosol	96.67	96.67
KRH40107	Soybean	endoplasmic reticulum	96.67	96.67
Solyc06g069860.2.1	Tomato	nucleus	95.0	95.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr6P14630_001	Banana	plasma membrane	91.67	91.67
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	90.83	90.83
GSMUA_Achr8P17000_001	Banana	cytosol	90.83	90.83
GSMUA_Achr7P18110_001	Banana	cytosol	90.0	90.0
Zm00001d050411_P001	Maize	cytosol	88.33	89.08
Zm00001d032181_P001	Maize	mitochondrion	88.33	89.08
TraesCS7A01G300500.1	Wheat	golgi, unclear	88.33	89.08
EES15047	Sorghum	cytosol	88.33	89.08
Os08t0436800-01	Rice	plastid	87.5	88.98
Os08t0156800-01	Rice	nucleus	87.5	88.98
GSMUA_Achr11P...	Banana	cytosol	88.33	88.33
EER98897	Sorghum	cytosol, mitochondrion	87.5	88.24
EES13382	Sorghum	cytosol	87.5	88.24
TraesCS7D01G296300.1	Wheat	cytosol	87.5	88.24
TraesCS7B01G201400.1	Wheat	cytosol	87.5	88.24
TraesCS5D01G239800.1	Wheat	cytosol	87.5	88.24
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	87.5	88.24
TraesCS5A01G227800.1	Wheat	cytosol	87.5	88.24
TraesCS2D01G323900.1	Wheat	unclear	87.5	88.24
TraesCS2B01G342800.1	Wheat	cytosol	87.5	88.24
TraesCS2A01G339200.1	Wheat	cytosol	87.5	88.24
HORVU7Hr1G071240.1	Barley	cytosol	87.5	88.24
Zm00001d020450_P001	Maize	plastid	87.5	87.5
Zm00001d024571_P001	Maize	cytosol	86.67	87.39
Zm00001d049552_P007	Maize	cytosol	88.33	79.7
Os09t0413500-01	Rice	plastid	40.83	79.03
VIT_14s0108g00850.t01	Wine grape	cytosol	76.67	65.71
HORVU2Hr1G080340.2	Barley	mitochondrion	69.17	56.85
Zm00001d038662_P001	Maize	cytosol, mitochondrion	42.5	55.43
Zm00001d007386_P001	Maize	plastid	40.83	34.51

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	UniProt:K4BBU9
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae
InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:Solyc02g087930.2	EnsemblPlants:Solyc02g087930.2.1	UniParc:UPI00027682EE	SEG:seg

Description

No Description!

Coordinates

chr2:-:50175013..50178724

Molecular Weight (calculated)

13777.2 Da

IEP (calculated)

12.132

GRAVY (calculated)

-0.848

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RIVKTPGGKL IYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKLASKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.