Factsheet for Solyc05g007560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080291	Potato	cytosol	98.33	98.33
Solyc06g069860.2.1	Tomato	nucleus	97.5	97.5
Solyc02g087930.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	97.5	97.5
KRH40107	Soybean	endoplasmic reticulum	95.83	95.83
KRH01164	Soybean	cytosol	95.83	95.83
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	93.33	93.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.5	92.5
GSMUA_Achr6P14630_001	Banana	plasma membrane	92.5	92.5
GSMUA_Achr7P18110_001	Banana	cytosol	92.5	92.5
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	91.67	91.67
GSMUA_Achr8P17000_001	Banana	cytosol	91.67	91.67
Zm00001d050411_P001	Maize	cytosol	89.17	89.92
TraesCS7A01G300500.1	Wheat	golgi, unclear	89.17	89.92
EES15047	Sorghum	cytosol	89.17	89.92
Os08t0156800-01	Rice	nucleus	88.33	89.83
Os08t0436800-01	Rice	plastid	88.33	89.83
EER98897	Sorghum	cytosol, mitochondrion	88.33	89.08
HORVU7Hr1G071240.1	Barley	cytosol	88.33	89.08
TraesCS7D01G296300.1	Wheat	cytosol	88.33	89.08
TraesCS7B01G201400.1	Wheat	cytosol	88.33	89.08
EES13382	Sorghum	cytosol	88.33	89.08
TraesCS5D01G239800.1	Wheat	cytosol	88.33	89.08
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	88.33	89.08
TraesCS5A01G227800.1	Wheat	cytosol	88.33	89.08
TraesCS2D01G323900.1	Wheat	unclear	88.33	89.08
TraesCS2B01G342800.1	Wheat	cytosol	88.33	89.08
TraesCS2A01G339200.1	Wheat	cytosol	88.33	89.08
GSMUA_Achr11P...	Banana	cytosol	88.33	88.33
Zm00001d020450_P001	Maize	plastid	88.33	88.33
Zm00001d032181_P001	Maize	mitochondrion	87.5	88.24
Zm00001d024571_P001	Maize	cytosol	86.67	87.39
Os09t0413500-01	Rice	plastid	41.67	80.65
Zm00001d049552_P007	Maize	cytosol	88.33	79.7
VIT_14s0108g00850.t01	Wine grape	cytosol	77.5	66.43
HORVU2Hr1G080340.2	Barley	mitochondrion	70.0	57.53
Zm00001d038662_P001	Maize	cytosol, mitochondrion	42.5	55.43
Zm00001d007386_P001	Maize	plastid	40.83	34.51

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0042254	InterPro:IPR038562	UniProt:K4BWT1
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae
InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	EnsemblPlantsGene:Solyc05g007560.2	EnsemblPlants:Solyc05g007560.2.1	UniParc:UPI0002765CAD	SEG:seg

Description

No Description!

Coordinates

chr5:-:2100690..2103376

Molecular Weight (calculated)

13780.1 Da

IEP (calculated)

12.132

GRAVY (calculated)

-0.866

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLTYRKR HSYATKSNQH RVVKTPGGKL IYQTTKKRAN GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKIQ KAKEKLASKS

Best Arabidopsis Sequence Match ( AT1G26880.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPS EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
101: KIVKKVLKLQ KAKEKVAPKA

Arabidopsis Description

RPL34A60S ribosomal protein L34-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42351]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.