CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28900.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039041.1-P	Field mustard	cytosol, mitochondrion, plastid	100.0	100.0
CDY20010	Canola	cytosol, mitochondrion, plastid	100.0	100.0
CDX95913	Canola	cytosol, mitochondrion, plastid	96.67	96.67
CDY01759	Canola	cytosol, mitochondrion, plastid	96.67	96.67
CDY04284	Canola	cytosol, mitochondrion, plastid	95.83	95.83
CDY07341	Canola	extracellular	95.83	95.83
CDY44081	Canola	cytosol, mitochondrion, plastid	95.83	95.83
CDY68374	Canola	cytosol, mitochondrion, plastid	95.83	95.83
AT3G28900.1	Thale cress	cytosol	95.0	95.0
CDY46432	Canola	cytosol	92.5	92.5
CDY65271	Canola	cytosol	92.5	92.5
Solyc06g069860.2.1	Tomato	nucleus	88.33	88.33
KRH40107	Soybean	endoplasmic reticulum	87.5	87.5
KRH01164	Soybean	cytosol	87.5	87.5
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	85.83	85.83
Zm00001d050411_P001	Maize	cytosol	85.0	85.71
EER98897	Sorghum	cytosol, mitochondrion	85.0	85.71
EES15047	Sorghum	cytosol	85.0	85.71
Os08t0436800-01	Rice	plastid	84.17	85.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
Zm00001d020450_P001	Maize	plastid	85.0	85.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	85.0	85.0
GSMUA_Achr8P17000_001	Banana	cytosol	85.0	85.0
GSMUA_Achr6P14630_001	Banana	plasma membrane	85.0	85.0
TraesCS7A01G300500.1	Wheat	golgi, unclear	84.17	84.87
Os08t0156800-01	Rice	nucleus	83.33	84.75
GSMUA_Achr3P20070_001	Banana	cytosol, mitochondrion	84.17	84.17
Zm00001d032181_P001	Maize	mitochondrion	83.33	84.03
TraesCS7B01G201400.1	Wheat	cytosol	83.33	84.03
TraesCS5D01G239800.1	Wheat	cytosol	83.33	84.03
TraesCS5B01G226600.1	Wheat	golgi, plastid, unclear	83.33	84.03
TraesCS5A01G227800.1	Wheat	cytosol	83.33	84.03
TraesCS7D01G296300.1	Wheat	cytosol	83.33	84.03
HORVU7Hr1G071240.1	Barley	cytosol	83.33	84.03
GSMUA_Achr7P18110_001	Banana	cytosol	83.33	83.33
TraesCS2A01G339200.1	Wheat	cytosol	82.5	83.19
TraesCS2B01G342800.1	Wheat	cytosol	82.5	83.19
TraesCS2D01G323900.1	Wheat	unclear	82.5	83.19
EES13382	Sorghum	cytosol	82.5	83.19
GSMUA_Achr11P...	Banana	cytosol	82.5	82.5
Zm00001d024571_P001	Maize	cytosol	81.67	82.35
PGSC0003DMT400083150	Potato	cytosol	70.0	78.5
Zm00001d049552_P007	Maize	cytosol	81.67	73.68
Os09t0413500-01	Rice	plastid	37.5	72.58
VIT_14s0108g00850.t01	Wine grape	cytosol	71.67	61.43
HORVU2Hr1G080340.2	Barley	mitochondrion	66.67	54.79
Zm00001d038662_P001	Maize	cytosol, mitochondrion	41.67	54.35
Zm00001d007386_P001	Maize	plastid	39.17	33.1
CDY44427	Canola	cytosol	7.5	9.78

Protein Annotations

MapMan:17.1.2.1.34	Gene3D:3.40.1800.40	GO:A0A078EL71	UniProt:A0A078EL71	EnsemblPlants:CDY00108	ProteinID:CDY00108
ProteinID:CDY00108.1	ProteinID:CDY20010.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00109609001	InterPro:IPR038562
PFAM:PF01199	PRINTS:PR01250	ScanProsite:PS01145	PANTHER:PTHR10759	PANTHER:PTHR10759:SF30	InterPro:Ribosomal_L34Ae
InterPro:Ribosomal_L34Ae_sf	InterPro:Ribosomal_L34e_CS	UniParc:UPI0002541C12	SEG:seg	:	:

Description

BnaC09g01930DBnaA09g02410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EL71]

Coordinates

chrLK031916:+:838079..839055

Molecular Weight (calculated)

13680.0 Da

IEP (calculated)

12.054

GRAVY (calculated)

-0.827

Length

120 amino acids

Sequence
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLSRN RRTVNRAYGG VLSGLAVKDR IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKTAPKS

Best Arabidopsis Sequence Match ( AT3G28900.1 )
(BLAST)

001: MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTNKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLARN ERTVNRAYGG VLSGVAVRER IVRAFLVEEQ
101: KIVKKVLKLQ KAKEKTAPKS

Arabidopsis Description

RPL34C60S ribosomal protein L34-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.