Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 8
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
16847873
cytosol: 19562800 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038483.1-P | Field mustard | vacuole | 100.0 | 100.0 |
| CDX89275 | Canola | vacuole | 93.3 | 97.09 |
| CDX89273 | Canola | cytosol | 93.3 | 97.09 |
| CDY29280 | Canola | vacuole | 92.74 | 95.95 |
| CDY29278 | Canola | vacuole | 91.62 | 95.35 |
| CDX89271 | Canola | vacuole | 91.62 | 95.35 |
| CDY29281 | Canola | vacuole | 91.06 | 94.22 |
| CDY61462 | Canola | vacuole | 93.3 | 92.78 |
| CDX89270 | Canola | vacuole | 64.8 | 92.06 |
| CDY29279 | Canola | vacuole | 88.83 | 88.33 |
| CDX70800 | Canola | vacuole | 86.59 | 88.07 |
| CDY51244 | Canola | cytosol | 88.83 | 85.48 |
| CDY46662 | Canola | vacuole | 73.18 | 75.72 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 64.25 | 70.12 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 60.89 | 65.66 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 59.78 | 65.24 |
| AT4G27150.1 | Thale cress | extracellular | 59.78 | 62.94 |
| CDY46659 | Canola | cytosol | 52.51 | 59.49 |
| CDX92819 | Canola | endoplasmic reticulum, extracellular | 51.96 | 58.86 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 31.28 | 46.67 |
| CDX97380 | Canola | cytosol | 30.73 | 45.83 |
Protein Annotations
| EnsemblPlants:CDY32264 | EnsemblPlantsGene:GSBRNA2T00051713001 | Gene3D:1.10.110.10 | GO:A0A078H4D8 | GO:GO:0003674 | GO:GO:0045735 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Napin | PANTHER:PTHR35496 | PFAM:PF00234 | PRINTS:PR00496 |
| ProteinID:CDY32264 | ProteinID:CDY32264.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 |
| TMHMM:TMhelix | UniParc:UPI0002544502 | UniProt:A0A078H4D8 | MapMan:35.1 | : | : |
Description
BnaA01g17200DBnaA01g17200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4D8]
Coordinates
chrLK032290:+:369074..369816
Molecular Weight (calculated)
20244.2 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.580
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASIYRTVVEF DEDDATNPAG PFRIPKCRKE FQQAQHLKAC QQWLHKQAMQ SGSGPSWTLD GEFDFEDDME NPQGPQQRPP
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QIQQQQGQQQ GKQQMVSRIY QTATHLPKVC NIPQVSVCPF QKTMPGPSY
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QIQQQQGQQQ GKQQMVSRIY QTATHLPKVC NIPQVSVCPF QKTMPGPSY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.