Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G27170.1 | Thale cress | extracellular, vacuole | 73.78 | 72.89 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 71.95 | 71.95 |
| AT4G27150.1 | Thale cress | extracellular | 72.56 | 70.0 |
| CDY29278 | Canola | vacuole | 69.51 | 66.28 |
| CDX89273 | Canola | cytosol | 68.29 | 65.12 |
| CDX89275 | Canola | vacuole | 67.68 | 64.53 |
| CDY32264 | Canola | cytosol | 70.12 | 64.25 |
| Bra038483.1-P | Field mustard | vacuole | 70.12 | 64.25 |
| CDY29280 | Canola | vacuole | 67.68 | 64.16 |
| CDY46662 | Canola | vacuole | 67.07 | 63.58 |
| Bra019067.1-P | Field mustard | vacuole | 67.07 | 63.58 |
| CDY29281 | Canola | vacuole | 67.07 | 63.58 |
| CDX89271 | Canola | vacuole | 66.46 | 63.37 |
| CDY61462 | Canola | vacuole | 69.51 | 63.33 |
| CDY29279 | Canola | vacuole | 69.51 | 63.33 |
| CDX70800 | Canola | vacuole | 66.46 | 61.93 |
| Bra026375.1-P | Field mustard | vacuole | 67.68 | 61.67 |
| CDY51244 | Canola | cytosol | 67.68 | 59.68 |
| Bra026373.1-P | Field mustard | vacuole | 65.85 | 59.34 |
| Bra006444.1-P | Field mustard | vacuole | 65.85 | 58.7 |
| CDX89270 | Canola | vacuole | 44.51 | 57.94 |
| Bra010409.1-P | Field mustard | vacuole | 60.37 | 57.89 |
| Bra026374.1-P | Field mustard | vacuole | 68.29 | 57.73 |
| Bra026372.1-P | Field mustard | extracellular | 42.68 | 57.38 |
| AT5G54740.1 | Thale cress | extracellular, vacuole | 54.88 | 54.55 |
| CDX97380 | Canola | cytosol | 29.27 | 40.0 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 29.27 | 40.0 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | EntrezGene:828822 | UniProt:A0A178UXL9 | ProteinID:AAA32743.1 | ProteinID:AEE85306.1 |
| EMBL:AF370541 | ArrayExpress:AT4G27140 | EnsemblPlantsGene:AT4G27140 | RefSeq:AT4G27140 | TAIR:AT4G27140 | RefSeq:AT4G27140-TAIR-G |
| EnsemblPlants:AT4G27140.1 | TAIR:AT4G27140.1 | EMBL:AY072508 | Unigene:At.158 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store |
| ProteinID:CAA80870.1 | ProteinID:CAB38844.1 | ProteinID:CAB79569.1 | GO:GO:0003674 | GO:GO:0045735 | RefSeq:NP_194444.1 |
| InterPro:Napin | ProteinID:OAO97411.1 | UniProt:P15457 | PFAM:PF00234 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0007123 | PO:PO:0009025 | PO:PO:0020137 | PRINTS:PR00496 | PANTHER:PTHR35496 | Symbol:SESA1 |
| SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000000ABC | SEG:seg |
Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
Coordinates
chr4:+:13607329..13608031
Molecular Weight (calculated)
19014.8 Da
IEP (calculated)
5.708
GRAVY (calculated)
-0.585
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.