Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 8
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89273 | Canola | cytosol | 88.14 | 99.42 |
| Bra026375.1-P | Field mustard | vacuole | 89.69 | 96.67 |
| Bra026373.1-P | Field mustard | vacuole | 88.66 | 94.51 |
| Bra038483.1-P | Field mustard | vacuole | 87.11 | 94.41 |
| Bra026372.1-P | Field mustard | extracellular | 58.25 | 92.62 |
| Bra006444.1-P | Field mustard | vacuole | 85.05 | 89.67 |
| Bra019067.1-P | Field mustard | vacuole | 65.98 | 73.99 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 57.73 | 68.29 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 54.64 | 64.63 |
| Bra010409.1-P | Field mustard | vacuole | 56.7 | 64.33 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 54.64 | 63.86 |
| AT4G27150.1 | Thale cress | extracellular | 54.64 | 62.35 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 47.94 | 58.86 |
Protein Annotations
| EnsemblPlants:Bra026374.1 | EnsemblPlants:Bra026374.1-P | EnsemblPlantsGene:Bra026374 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Napin | PFAM:PF00234 | PRINTS:PR00496 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TMHMM:TMhelix | UniParc:UPI0002545765 | UniProt:M4EC65 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT4G27140 (E=9e-036) | 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1
Coordinates
chrA01:+:9660205..9660789
Molecular Weight (calculated)
21870.1 Da
IEP (calculated)
6.337
GRAVY (calculated)
-0.485
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASIYRTVVEV DEDDAASVYR TVVEVDEDAT NPAGPFRIPK CRKEFQQAQH LKACQQWLHK QAMQSGSGPS WTLDGEFDFE
101: DDMENPQGPQ QRPPLLQQCC NELHQEEPLC VCPTLKGASK AVKQQVRQQG QMQGQQMQHV ISRIYQTATH LPKVCNIPQV SVCPFQKTMP GPSY
101: DDMENPQGPQ QRPPLLQQCC NELHQEEPLC VCPTLKGASK AVKQQVRQQG QMQGQQMQHV ISRIYQTATH LPKVCNIPQV SVCPFQKTMP GPSY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.