Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 8
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89271 | Canola | vacuole | 93.96 | 99.42 |
| CDY29280 | Canola | vacuole | 93.41 | 98.27 |
| Bra026375.1-P | Field mustard | vacuole | 95.6 | 96.67 |
| Bra026372.1-P | Field mustard | extracellular | 63.19 | 94.26 |
| Bra038483.1-P | Field mustard | vacuole | 91.76 | 93.3 |
| Bra006444.1-P | Field mustard | vacuole | 91.76 | 90.76 |
| Bra026374.1-P | Field mustard | vacuole | 94.51 | 88.66 |
| Bra019067.1-P | Field mustard | vacuole | 70.33 | 73.99 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 59.34 | 65.85 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 56.59 | 62.8 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 57.14 | 62.65 |
| Bra010409.1-P | Field mustard | vacuole | 58.79 | 62.57 |
| AT4G27150.1 | Thale cress | extracellular | 56.59 | 60.59 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 50.0 | 57.59 |
Protein Annotations
| EnsemblPlants:Bra026373.1 | EnsemblPlants:Bra026373.1-P | EnsemblPlantsGene:Bra026373 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Napin | PANTHER:PTHR35496 | PFAM:PF00234 | PRINTS:PR00496 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TMHMM:TMhelix | UniParc:UPI0002545AFC |
| UniProt:M4EC64 | MapMan:35.1 | : | : | : | : |
Description
AT4G27140 (E=4e-043) | 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1
Coordinates
chrA01:+:9674153..9674701
Molecular Weight (calculated)
20418.4 Da
IEP (calculated)
7.705
GRAVY (calculated)
-0.537
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASVYRTVVEV DEDATNPAGP FRIPKCRKEF QQAQHLKACQ QWLHKQAMQS GSGPSWTLDG EFDFDDDMEN PQGPQQRPPL
101: LQQCCNELHQ EEPLCVCPTL KGASKAVKQQ VRQQGGQQGQ QGQQLQQVIS RIYQTATHLP KVCNIPQVSI CPFQKTMPGP SY
101: LQQCCNELHQ EEPLCVCPTL KGASKAVKQQ VRQQGGQQGQ QGQQLQQVIS RIYQTATHLP KVCNIPQVSI CPFQKTMPGP SY
001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
Arabidopsis Description
AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.