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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 5
  • extracellular 6
  • vacuole 5
  • plasma membrane 4
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G27150.1 Thale cress extracellular 90.24 87.06
AT4G27170.1 Thale cress extracellular, vacuole 80.49 79.52
AT4G27140.1 Thale cress extracellular, vacuole 71.95 71.95
CDY29278 Canola vacuole 65.85 62.79
CDY46662 Canola vacuole 65.85 62.43
Bra019067.1-P Field mustard vacuole 65.85 62.43
CDX89273 Canola cytosol 64.63 61.63
CDY29281 Canola vacuole 64.63 61.27
CDX89275 Canola vacuole 64.02 61.05
CDY29280 Canola vacuole 64.02 60.69
CDX89271 Canola vacuole 63.41 60.47
CDY61462 Canola vacuole 65.85 60.0
Bra038483.1-P Field mustard vacuole 65.24 59.78
CDY32264 Canola cytosol 65.24 59.78
CDX70800 Canola vacuole 64.02 59.66
Bra026375.1-P Field mustard vacuole 64.02 58.33
CDY29279 Canola vacuole 64.02 58.33
CDY51244 Canola cytosol 65.24 57.53
Bra026372.1-P Field mustard extracellular 42.68 57.38
CDX89270 Canola vacuole 43.9 57.14
Bra026373.1-P Field mustard vacuole 62.8 56.59
Bra006444.1-P Field mustard vacuole 62.8 55.98
Bra010409.1-P Field mustard vacuole 57.32 54.97
Bra026374.1-P Field mustard vacuole 64.63 54.64
AT5G54740.1 Thale cress extracellular, vacuole 52.44 52.12
CDX97380 Canola cytosol 25.0 34.17
CDY14281 Canola cytosol, nucleus, plastid 23.78 32.5
Protein Annotations
Gene3D:1.10.110.10MapMan:35.1EntrezGene:828823EntrezGene:828824UniProt:A0A178UUE6ProteinID:AAA32744.1
ProteinID:AAA32745.1ProteinID:AEE85307.1ProteinID:AEE85308.1Symbol:AT2S3ArrayExpress:AT4G27160EnsemblPlantsGene:AT4G27160
RefSeq:AT4G27160TAIR:AT4G27160RefSeq:AT4G27160-TAIR-GEnsemblPlants:AT4G27160.1TAIR:AT4G27160.1EMBL:AY080779
EMBL:AY117157Unigene:At.19908EMBL:BT002073EMBL:BT006557InterPro:Bifun_inhib/LTP/seed_sfInterPro:Bifunc_inhib/LTP/seed_store
ProteinID:CAA80868.1ProteinID:CAA80871.1ProteinID:CAB38845.1ProteinID:CAB38846.1ProteinID:CAB79570.1ProteinID:CAB79571.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0043424GO:GO:0045735RefSeq:NP_194445.1
RefSeq:NP_194446.1InterPro:NapinProteinID:OAO97140.1ProteinID:OAP00140.1UniProt:P15459PFAM:PF00234
PRINTS:PR00496PANTHER:PTHR35496SMART:SM00499SUPFAM:SSF47699SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI00000017AAEMBL:Z17580EMBL:Z17594EMBL:Z17598::
Description
AT2S32S seed storage protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P15459]
Coordinates
chr4:+:13611796..13612563
Molecular Weight (calculated)
18763.5 Da
IEP (calculated)
7.866
GRAVY (calculated)
-0.501
Length
164 amino acids
Sequence
(BLAST)
001: MANKLFLVCA TLALCFLLTN ASIYRTVVEF EEDDASNPVG PRQRCQKEFQ QSQHLRACQR WMSKQMRQGR GGGPSLDDEF DFEGPQQGYQ LLQQCCNELR
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.