Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 7
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51244 | Canola | cytosol | 96.2 | 95.16 |
| CDX70800 | Canola | vacuole | 89.13 | 93.18 |
| Bra026372.1-P | Field mustard | extracellular | 60.87 | 91.8 |
| Bra026373.1-P | Field mustard | vacuole | 90.76 | 91.76 |
| Bra026375.1-P | Field mustard | vacuole | 89.67 | 91.67 |
| Bra038483.1-P | Field mustard | vacuole | 85.87 | 88.27 |
| Bra026374.1-P | Field mustard | vacuole | 89.67 | 85.05 |
| Bra019067.1-P | Field mustard | vacuole | 67.93 | 72.25 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 58.7 | 65.85 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 55.98 | 62.8 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 55.98 | 62.05 |
| Bra010409.1-P | Field mustard | vacuole | 56.52 | 60.82 |
| AT4G27150.1 | Thale cress | extracellular | 55.43 | 60.0 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 47.83 | 55.7 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlantsGene:Bra006444 | EnsemblPlants:Bra006444.1 |
| EnsemblPlants:Bra006444.1-P | GO:GO:0003674 | GO:GO:0045735 | UniProt:M4CQF5 | InterPro:Napin | PFAM:PF00234 |
| PRINTS:PR00496 | PANTHER:PTHR35496 | SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000253FE58 | SEG:seg | : | : | : | : |
Description
AT4G27170 (E=3e-035) | 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4
Coordinates
chrA03:-:3506331..3506885
Molecular Weight (calculated)
21097.2 Da
IEP (calculated)
7.312
GRAVY (calculated)
-0.620
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLALFFLLTN ASVYRTVVEV DEDDATNPAG PFRIPKCRKE FQQAQHLKDC QQWLHKQAMQ SGSGPSWTLD VEFDFEDDME NQQQGPQQRP
101: PLLQQCCNEL HQEEPLCVCP TWKGPSKAVK QQVRQQQGQQ MQGQQMQQVI SRIYQTATHL PRVCNIRQVS ICPFQKTMPG PGFY
101: PLLQQCCNEL HQEEPLCVCP TWKGPSKAVK QQVRQQQGQQ MQGQQMQQVI SRIYQTATHL PRVCNIRQVS ICPFQKTMPG PGFY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.