CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX84933
CDX95198
CDX95199
CDY03907
CDY15722
CDY27605
CDY42355
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27140.1	CDX84933	AT1G27300.1	21798944
AT4G27140.1	CDY03907	AT1G27300.1	21798944
AT4G27140.1	CDY15722	AT1G27300.1	21798944
AT4G27140.1	CDY27605	AT1G27300.1	21798944
AT4G27140.1	CDX95198	AT5G42220.1	21798944
AT4G27140.1	CDX95199	AT5G42220.1	21798944
AT4G27140.1	CDY42355	AT5G42220.1	21798944
AT4G27160.1	CDX74635	AT5G35750.1	18642946
AT4G27160.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29281	Canola	vacuole	91.48	93.06
CDY51244	Canola	cytosol	98.3	93.01
CDX89271	Canola	vacuole	90.34	92.44
CDY29280	Canola	vacuole	90.34	91.91
CDY29278	Canola	vacuole	89.77	91.86
CDX89273	Canola	cytosol	89.77	91.86
CDX89275	Canola	vacuole	89.2	91.28
CDX89270	Canola	vacuole	65.34	91.27
Bra006444.1-P	Field mustard	vacuole	93.18	89.13
CDY61462	Canola	vacuole	89.77	87.78
CDY32264	Canola	cytosol	88.07	86.59
CDY29279	Canola	vacuole	85.23	83.33
CDY46662	Canola	vacuole	72.73	73.99
AT4G27140.1	Thale cress	extracellular, vacuole	61.93	66.46
AT4G27160.1	Thale cress	extracellular, vacuole	59.66	64.02
AT4G27170.1	Thale cress	extracellular, vacuole	59.66	63.25
AT4G27150.1	Thale cress	extracellular	59.09	61.18
CDY46659	Canola	cytosol	53.41	59.49
CDX92819	Canola	endoplasmic reticulum, extracellular	52.84	58.86
CDY14281	Canola	cytosol, nucleus, plastid	28.41	41.67
CDX97380	Canola	cytosol	28.41	41.67

Protein Annotations

EnsemblPlants:CDX70800	EnsemblPlantsGene:GSBRNA2T00140682001	Gene3D:1.10.110.10	GO:A0A078C1L5	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Napin	PANTHER:PTHR35496	PFAM:PF00234	PRINTS:PR00496
ProteinID:CDX70800	ProteinID:CDX70800.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699
TMHMM:TMhelix	UniParc:UPI0004EF15B0	MapMan:35.1	:	:	:

Description

BnaC03g08840D

Coordinates

chrLK031791:-:2085288..2085848

Molecular Weight (calculated)

19880.8 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.510

Length

176 amino acids

Sequence
(BLAST)

001: MANKLFLVSA TLALFFLLTN ASVYRTVVEV DEDDTTNQAG PFRIPKCRKE FQQAQHLRAC QQWLHKQAMQ PGGGSGPSWT LDGEFDFEDD VENQQQGPQQ
101: RPPLLQQCCN ELHQEEPLCV CPTLKGASKA VKQQGQQMQQ VISRIYQTAT HLPRVCNIRQ VSICPFQKTM PGPGFY

Best Arabidopsis Sequence Match ( AT4G27140.1 )
(BLAST)

001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY

Arabidopsis Description

AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.