Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29278 | Canola | vacuole | 95.56 | 100.0 |
| CDY29280 | Canola | vacuole | 93.33 | 97.11 |
| CDX89275 | Canola | vacuole | 92.78 | 97.09 |
| CDX89271 | Canola | vacuole | 92.22 | 96.51 |
| CDX89273 | Canola | cytosol | 92.22 | 96.51 |
| CDY29281 | Canola | vacuole | 91.67 | 95.38 |
| CDY32264 | Canola | cytosol | 92.78 | 93.3 |
| CDY51244 | Canola | cytosol | 92.78 | 89.78 |
| CDX70800 | Canola | vacuole | 87.78 | 89.77 |
| CDX89270 | Canola | vacuole | 62.78 | 89.68 |
| CDY29279 | Canola | vacuole | 87.22 | 87.22 |
| CDY46662 | Canola | vacuole | 73.33 | 76.3 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 63.33 | 69.51 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 60.0 | 65.85 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 59.44 | 64.46 |
| AT4G27150.1 | Thale cress | extracellular | 58.89 | 62.35 |
| CDY46659 | Canola | cytosol | 50.56 | 57.59 |
| CDX92819 | Canola | endoplasmic reticulum, extracellular | 50.0 | 56.96 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 28.89 | 43.33 |
| CDX97380 | Canola | cytosol | 28.33 | 42.5 |
Protein Annotations
| EnsemblPlants:CDY61462 | EnsemblPlantsGene:GSBRNA2T00033874001 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | GO:Q42469 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Napin | PANTHER:PTHR35496 | PFAM:PF00234 | PRINTS:PR00496 |
| ProteinID:CDY61462 | ProteinID:CDY61462.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 |
| TMHMM:TMhelix | unigene:Bna.2089 | UniParc:UPI00000A035F | UniProt:Q42469 | MapMan:35.1 | : |
Description
BnaC01g43250DBnaC01g43250D protein [Source:UniProtKB/TrEMBL;Acc:Q42469]
Coordinates
chrLK033998:+:35168..35710
Molecular Weight (calculated)
20343.3 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.539
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLALFFLLTN ASIYRTVVEV EEDDATNPAG PFRIPKCRKE FQQAQHLRAC QQWLHKQAMQ SGSGPSWTLD GEFDFEDDME NPQSPQQRPP
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QVRQQQGQQG QQLQQVISRI YQTATHLPKV CNIPQVSVCP FQKTMPGPSY
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QVRQQQGQQG QQLQQVISRI YQTATHLPKV CNIPQVSVCP FQKTMPGPSY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.