Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42355 | Canola | nucleus | 89.6 | 37.9 |
| AT5G42220.1 | Thale cress | nucleus | 72.83 | 28.67 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 50.0 | 18.31 |
| Os07t0498800-01 | Rice | cytosol | 34.39 | 17.76 |
| KRH06004 | Soybean | nucleus | 47.98 | 17.66 |
| KRH17506 | Soybean | nucleus | 47.4 | 17.52 |
| Solyc04g082160.2.1 | Tomato | nucleus | 42.77 | 17.27 |
| CDX80493 | Canola | cytosol | 28.32 | 15.65 |
| CDX88166 | Canola | cytosol | 28.32 | 15.26 |
| KXG25466 | Sorghum | nucleus | 35.84 | 13.09 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 34.1 | 12.18 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 34.1 | 12.04 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 33.53 | 11.91 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 33.81 | 11.38 |
| HORVU6Hr1G002580.6 | Barley | plastid | 31.79 | 10.37 |
| Zm00001d052721_P001 | Maize | plasma membrane | 25.43 | 9.72 |
| PGSC0003DMT400025616 | Potato | plastid | 15.9 | 8.14 |
| TraesCS6A01G013800.1 | Wheat | plastid | 0.87 | 1.94 |
| CDX95198 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078E3T1 | EnsemblPlants:CDX95199 | ProteinID:CDX95199 | ProteinID:CDX95199.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00100788001 | InterPro:IPR000626 | PFAM:PF00240 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 |
| SUPFAM:SSF54236 | UniParc:UPI0004EF3423 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g16710D
Coordinates
chrLK031887:-:505731..508248
Molecular Weight (calculated)
36256.1 Da
IEP (calculated)
6.175
GRAVY (calculated)
-0.467
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDQATNQCS SSNNASVEST LELNIKTLDS QTYTFKADKN ETVSVFKEKI ASETGVPVAQ QRLIFRGRVL KDDHPLSEYH LENGHTLHLI VRQPAESMPS
101: SGTPSEGAAA NDGNGSNGGP SRGRGHISHS VVLGTFNPAD HTEGFGPDIS RVIGAVLNSF GVGGQNLPNS SINVTQPSMP SNLSGHPPPG NASGGTPATG
201: GQSQAAGQSQ PRPAFTSAAF RASMPHVVQI PITAATTIPI PSFQTPIPDS LDTLMEFINR MEQALSRNGY QPDTSSATSE GRPREELPRN TQGPSTPEAL
301: AIVLRSSQRL LSGLAVSSLS HIAGRLEQDG SSPDPALRGQ IQTEAV
101: SGTPSEGAAA NDGNGSNGGP SRGRGHISHS VVLGTFNPAD HTEGFGPDIS RVIGAVLNSF GVGGQNLPNS SINVTQPSMP SNLSGHPPPG NASGGTPATG
201: GQSQAAGQSQ PRPAFTSAAF RASMPHVVQI PITAATTIPI PSFQTPIPDS LDTLMEFINR MEQALSRNGY QPDTSSATSE GRPREELPRN TQGPSTPEAL
301: AIVLRSSQRL LSGLAVSSLS HIAGRLEQDG SSPDPALRGQ IQTEAV
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.