Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71401 | Canola | extracellular | 44.92 | 32.12 |
| CDY04522 | Canola | extracellular | 44.07 | 31.52 |
| CDY69310 | Canola | extracellular | 35.59 | 27.63 |
| CDY69319 | Canola | extracellular | 34.75 | 26.8 |
| AT5G23820.1 | Thale cress | extracellular | 31.36 | 22.56 |
| CDX76495 | Canola | extracellular | 32.2 | 21.59 |
| AT5G23840.1 | Thale cress | extracellular | 29.66 | 20.96 |
| CDY09273 | Canola | endoplasmic reticulum, plasma membrane | 30.51 | 20.45 |
| AT5G23830.1 | Thale cress | extracellular | 27.97 | 20.12 |
Protein Annotations
| EnsemblPlants:CDY15040 | EnsemblPlantsGene:GSBRNA2T00085137001 | InterPro:ML_dom | PANTHER:PTHR11306 | PANTHER:PTHR11306:SF13 | PFAM:PF02221 |
| ProteinID:CDY15040 | ProteinID:CDY15040.1 | SEG:seg | UniParc:UPI0004EEB876 | UniProt:A0A078FKR9 | MapMan:35.2 |
Description
BnaCnng04430DBnaCnng04430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKR9]
Coordinates
chrLK032050:+:754129..764761
Molecular Weight (calculated)
13172.8 Da
IEP (calculated)
4.655
GRAVY (calculated)
0.147
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYNFVSQNT EKLFLLEGQQ ADPWRYLLFV SLLFLPALYS IDYEYCDKSG YDFGNVSYVD ITPNPVGKED KATLMIFGFA KNSIYGGYVG VSVKAGDTTY
101: NVARYPLCVL VSGCSIKA
101: NVARYPLCVL VSGCSIKA
001: MAMSHVQPVL FFLASLFFLL ALCSANDFEY CTKNGHDYGV VSWIEVFRVG PQENPTLTIN VFAKEISAGT LVYVAYRSGD FTGLLKTYDL CDVSLACNID
101: SEIEAGDVFD FSLKDVLYVG FDEGIKYSVS LRQKTAEEED PIIKMCIDFK VPASASAFVS I
101: SEIEAGDVFD FSLKDVLYVG FDEGIKYSVS LRQKTAEEED PIIKMCIDFK VPASASAFVS I
Arabidopsis Description
MD-2-related lipid recognition domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FF97]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.