Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76495 | Canola | extracellular | 95.45 | 95.45 |
| CDY69319 | Canola | extracellular | 51.14 | 58.82 |
| CDY69310 | Canola | extracellular | 50.0 | 57.89 |
| CDY04522 | Canola | extracellular | 41.48 | 44.24 |
| CDX71401 | Canola | extracellular | 40.91 | 43.64 |
| AT2G26370.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 36.36 | 36.99 |
| CDY15040 | Canola | cytosol, extracellular | 20.45 | 30.51 |
Protein Annotations
| EnsemblPlants:CDY09273 | EnsemblPlantsGene:GSBRNA2T00001551001 | InterPro:ML_dom | PFAM:PF02221 | ProteinID:CDY09273 | ProteinID:CDY09273.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE25AB | UniProt:A0A078FBJ4 | MapMan:35.2 |
Description
BnaC03g63030DBnaC03g63030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBJ4]
Coordinates
chrLK031994:+:243399..244824
Molecular Weight (calculated)
19511.3 Da
IEP (calculated)
4.215
GRAVY (calculated)
0.082
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSYVQLLL LVLASLLFLR ALCAVDFGYC NKNGYDYGNF SRVEISPNPV GPEDNYLNIT VSGYASKQMN NVTIEVYAKS KKTTDLLGGY SICKVGNACV
101: IRSGLCFSPE CSIEARTKFV LPIPKVQVDD LEDDFKYVVS LLEDDLVNSS DYDEKFIERM CVDFVVPMSD STLDSA
101: IRSGLCFSPE CSIEARTKFV LPIPKVQVDD LEDDFKYVVS LLEDDLVNSS DYDEKFIERM CVDFVVPMSD STLDSA
001: MAMSHIQPVL FFLASLFFLP ALCSAIDFEY CTKNGHDYGS ISQIWVSPSD GPQENPTITI HLFGSASKDI SAGTLVYVTY RSGDFTGLLK TYDLCDVSAC
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
Arabidopsis Description
MD-2-related lipid recognition domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FF96]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.