Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04522 | Canola | extracellular | 96.36 | 96.36 |
| CDY69319 | Canola | extracellular | 43.64 | 47.06 |
| CDY69310 | Canola | extracellular | 42.42 | 46.05 |
| CDY15040 | Canola | cytosol, extracellular | 32.12 | 44.92 |
| AT5G23820.1 | Thale cress | extracellular | 43.03 | 43.29 |
| CDX76495 | Canola | extracellular | 44.24 | 41.48 |
| AT5G23840.1 | Thale cress | extracellular | 41.82 | 41.32 |
| CDY09273 | Canola | endoplasmic reticulum, plasma membrane | 43.64 | 40.91 |
| AT5G23830.1 | Thale cress | extracellular | 38.79 | 39.02 |
Protein Annotations
| EnsemblPlants:CDX71401 | EnsemblPlantsGene:GSBRNA2T00148223001 | InterPro:Ig_E-set | InterPro:ML_dom | PANTHER:PTHR11306 | PANTHER:PTHR11306:SF13 |
| PFAM:PF02221 | ProteinID:CDX71401 | ProteinID:CDX71401.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00737 |
| SUPFAM:SSF81296 | TMHMM:TMhelix | UniParc:UPI0004EDF4D1 | MapMan:35.2 | : | : |
Description
BnaC04g16360D
Coordinates
chrLK031793:+:514650..516217
Molecular Weight (calculated)
18051.6 Da
IEP (calculated)
3.911
GRAVY (calculated)
0.349
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MEILNARPVL LLLLASLFFL PALGAIDFEY CNKSGYDFFN VSRVEVSPNP VELEEYPTIR VFGYANKSMY DGTVEVKVTA GGTTQTMASY SLCVVGFECA
101: IVAGTNFELV LAEVPLEYIE GVSKYVYSVH LTNDDVGESE EPILKMCVAF EIPTVDLTMA SAQSS
101: IVAGTNFELV LAEVPLEYIE GVSKYVYSVH LTNDDVGESE EPILKMCVAF EIPTVDLTMA SAQSS
001: MAMSHVQPML LLLVSLFFLP ALRGAIDFEY CAKNGNDYGT VTSIVVSPSV GPHENPTITI NLFGSASKNI PAGTLVYVAF RDGEFTGLLK TYNLCDVSAC
101: NNEAEIEAGT NFELTLSDVL YVGYDEEIKY SVSLRRKTLE EEDPIIKMCV DFKVPAPAPA FVSI
101: NNEAEIEAGT NFELTLSDVL YVGYDEEIKY SVSLRRKTLE EEDPIIKMCV DFKVPAPAPA FVSI
Arabidopsis Description
ML3MD-2-related lipid-recognition protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF98]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.