Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G23820.1 | Thale cress | extracellular | 76.65 | 78.05 |
| AT5G23830.1 | Thale cress | extracellular | 74.85 | 76.22 |
| Bra011987.1-P | Field mustard | extracellular | 41.92 | 42.42 |
| CDY04522 | Canola | extracellular | 41.92 | 42.42 |
| CDX71401 | Canola | extracellular | 41.32 | 41.82 |
| AT2G26370.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 34.73 | 33.53 |
| CDY15040 | Canola | cytosol, extracellular | 20.96 | 29.66 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832449 | UniProt:A0A178UT10 | ProteinID:AED93221.1 | ArrayExpress:AT5G23840 | EnsemblPlantsGene:AT5G23840 |
| RefSeq:AT5G23840 | TAIR:AT5G23840 | RefSeq:AT5G23840-TAIR-G | EnsemblPlants:AT5G23840.1 | TAIR:AT5G23840.1 | EMBL:AY088243 |
| Unigene:At.27819 | ProteinID:BAB10057.1 | InterPro:ML_dom | RefSeq:NP_197773.1 | ProteinID:OAO96002.1 | PFAM:PF02221 |
| PO:PO:0009005 | PANTHER:PTHR11306 | PANTHER:PTHR11306:SF13 | UniProt:Q9FF96 | SMART:SM00737 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00000A0FB4 | SEG:seg | : | : | : |
Description
MD-2-related lipid recognition domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FF96]
Coordinates
chr5:+:8035690..8037110
Molecular Weight (calculated)
18467.0 Da
IEP (calculated)
4.313
GRAVY (calculated)
0.120
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSHIQPVL FFLASLFFLP ALCSAIDFEY CTKNGHDYGS ISQIWVSPSD GPQENPTITI HLFGSASKDI SAGTLVYVTY RSGDFTGLLK TYDLCDVSAC
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
101: NPEYVIEAGT DFELTLSDVL YVGFDEEIKY SVSLREKTSE EKNPIIKMCV DFKVPHPAFP PPALVSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.